BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA01RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1168 0.0
3x_Contig1802 353 4e-97
>3x_Contig1729
Length = 15481
Score = 1168 bits (589), Expect = 0.0
Identities = 705/736 (95%), Gaps = 6/736 (0%)
Strand = Plus / Minus
Query: 44 ctttgatgactaccgttcattccatcactgctactcaaaagactgttgatggtccatccc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13998 ctttgatgactaccgttcattccatcactgctactcaaaagactgttgatggtccatccc 13939
Query: 104 acaaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13938 acaaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtg 13879
Query: 164 ctgctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggctt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13878 ctgctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggctt 13819
Query: 224 tcagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13818 tcagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaag 13759
Query: 284 ccacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13758 ccacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatg 13699
Query: 344 ttgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactcca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13698 ttgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactcca 13639
Query: 404 ccatctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgctt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13638 ccatctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgctt 13579
Query: 464 ggtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgctt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13578 ggtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgctt 13519
Query: 524 aaattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgattc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13518 aaattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgattc 13459
Query: 584 catttgtttacttctaagttttttatcacctttttttttaaccattctatgccattcttt 643
||||| |||||||||||| ||||||||||| ||| | ||||||||||||||||| |||||
Sbjct: 13458 cattt-tttacttctaag-tttttatcacc-tttatcttaaccattctatgccagtcttt 13402
Query: 644 gctttatggactttganccaaacccagaagggaagttttaaactccaaataaaaacttct 703
|||||||||||||||| |||| ||||||||||||| || ||||||||||||| ||
Sbjct: 13401 gctttatggactttgattcaaattatgaagggaagtttt-tacgccaaataaaaactact 13343
Query: 704 tccacacattattaaaaaataatgaccaattattttaaattgtccaacaacttgcaaaat 763
| ||| |||||||||||| |||||| || || | | || |||| ||| ||| ||||||
Sbjct: 13342 acaacaaattattaaaaaa-aatgacgaa-taatatgaagtgtctaacgactgccaaaat 13285
Query: 764 tattcagtcctttttt 779
|||||| |||||||||
Sbjct: 13284 tattcattcctttttt 13269
>3x_Contig1802
Length = 45229
Score = 353 bits (178), Expect = 4e-97
Identities = 226/242 (93%)
Strand = Plus / Minus
Query: 64 tccatcactgctactcaaaagactgttgatggtccatcccacaaggactggagaggtggt 123
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15124 tccatcaccgctacccaaaagactgttgatggtccatcccaaaaggactggagaggtggt 15065
Query: 124 agaactgcttccggtaacattatcccatcctctactggtgctgctaaggctgtcggtaaa 183
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 15064 agaaccgcttccggtaacatcattccatcctctactggtgctgctaaggctgtcggtaag 15005
Query: 184 gtcttgccagaattgcaaggtaaattgaccggtatggctttcagagtcccaaccgtcgat 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 15004 gtcttgccagaattgcaaggtaagttgaccggtatggctttcagagtcccaaccgtcgat 14945
Query: 244 gtttctgtcgttgatttgaccgtcaagttggctaaggaagccacttacgatgaaatcaag 303
|| || || ||||| ||||| ||||||||||| |||||||| || |||||||||||||||
Sbjct: 14944 gtctccgttgttgacttgactgtcaagttggccaaggaagctacctacgatgaaatcaag 14885
Query: 304 gc 305
||
Sbjct: 14884 gc 14883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9136
Number of Sequences: 1807
Number of extensions: 9136
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)