BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZA02FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1103                                                        1667   0.0  

>3x_Contig1103 
          Length = 3850

 Score = 1667 bits (841), Expect = 0.0
 Identities = 860/866 (99%), Gaps = 1/866 (0%)
 Strand = Plus / Plus

                                                                        
Query: 85   cacagtttaatccacgatgcaccaagtgactcaggagagtacattactataattgattca 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234  cacagtttaatccacgatgcaccaagtgactcaggagagtacattactataattgattca 293

                                                                        
Query: 145  cttaatgacctaatcaaagaaaccacaatagaagatagaagaaatgaaatcgccagctcg 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294  cttaatgacctaatcaaagaaaccacaatagaagatagaagaaatgaaatcgccagctcg 353

                                                                        
Query: 205  aaagatatcttcttccaacttcgagaatcagctatacttggaaaatctgttgatttgaaa 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354  aaagatatcttcttccaacttcgagaatcagctatacttggaaaatctgttgatttgaaa 413

                                                                        
Query: 265  caagcttgcagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaat 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414  caagcttgcagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaat 473

                                                                        
Query: 325  ctttcagttgcaaatcaggttatacctcaaaatattctactacctaacacattcctggca 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  ctttcagttgcaaatcaggttatacctcaaaatattctactacctaacacattcctggca 533

                                                                        
Query: 385  tggtatttatccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatat 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  tggtatttatccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatat 593

                                                                        
Query: 445  ggtctagtatgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  ggtctagtatgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagc 653

                                                                        
Query: 505  tgttttgatgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggc 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  tgttttgatgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggc 713

                                                                        
Query: 565  attgttaatgcgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctca 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  attgttaatgcgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctca 773

                                                                        
Query: 625  tctttactcaatgatattagatctttggaagttatcgacaaactactactgcggggaata 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  tctttactcaatgatattagatctttggaagttatcgacaaactactactgcggggaata 833

                                                                        
Query: 685  attgcacagaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctt 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  attgcacagaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctt 893

                                                                        
Query: 745  tcttccttagctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttc 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  tcttccttagctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttc 953

                                                                        
Query: 805  gggtcttatatgaaaaccttacgaaaagaatatgngttttgcttctttcaacanaatgtt 864
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 954  gggtcttatatgaaaaccttacgaaaagaatatg-gttttgcttctttcaacaaaatgtt 1012

                                                                        
Query: 865  caagattgtcacaatgttggtgaccagttcanaangatgggacctttatcaggtgactgc 924
            ||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1013 caagattgtcacaatgttggtgaccagttcagaaagatgggacctttatcagttgactgc 1072

                                      
Query: 925  aattcttagctggacttttgatattt 950
            |||||| |||||||||||||||||||
Sbjct: 1073 aattctaagctggacttttgatattt 1098


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8655
Number of Sequences: 1807
Number of extensions: 8655
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)