BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA02RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1398 1689 0.0
>3x_Contig1398
Length = 9161
Score = 1689 bits (852), Expect = 0.0
Identities = 908/924 (98%), Gaps = 3/924 (0%)
Strand = Plus / Plus
Query: 44 cttcatatttaggagtaatattttaatggatccatgtacttactcctgttggcaatgcaa 103
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3318 cttcatatttaggagtaatattggaatggatccatgtacttactcctgttggcaatgcaa 3377
Query: 104 agaaagttggtattgtgaaatgtaaaggactggtaatcttgtctgggctaacggacacag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3378 agaaagttggtattgtgaaatgtaaaggactggtaatcttgtctgggctaacggacacag 3437
Query: 164 ttgagctaaagcctaaaacggaggtagctggtgcaactatttgttctgatttttttttca 223
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 3438 ttgagctaaagcctaaaacggaggtagctggtgcaactatttgttctgattctttcaaca 3497
Query: 224 taatatgccaactggatccttgtccattgagtgcaaaaatgcctctccctacgattttat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 taatatgccaactggatccttgtccattgagtgcaaaaatgcctctccctacgattttat 3557
Query: 284 ttccatttattgacacatctccggaatagcaaagtatattattcagaggatcattgaccg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 ttccatttattgacacatctccggaatagcaaagtatattattcagaggatcattgaccg 3617
Query: 344 tccatccttgctcataatcatcaaggttaataactgtgacgttgtttagccttgtagatg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618 tccatccttgctcataatcatcaaggttaataactgtgacgttgtttagccttgtagatg 3677
Query: 404 cggtacagatcagattaacaggctcatcggccgtggataatgtgacgaatccggtatctt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 cggtacagatcagattaacaggctcatcggccgtggataatgtgacgaatccggtatctt 3737
Query: 464 tttgtttttggatagcgaacagcttcgtaagctctatgtccttcaactcatttgaactat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 tttgtttttggatagcgaacagcttcgtaagctctatgtccttcaactcatttgaactat 3797
Query: 524 caataacggtgatattgttgagcttacctaccacagagctggaacttggtatccgaagca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 caataacggtgatattgttgagcttacctaccacagagctggaacttggtatccgaagca 3857
Query: 584 gaagtgagtcatgcaatggctgtagatctgggagttccacaaatggtcccgttccagtac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3858 gaagtgagtcatgcaatggctgtagatctgggagttccacaaatggtcccgttccagtac 3917
Query: 644 cttgttttctggcggacaaattcgtaatggctgtccgtaacaccgcattcccggagaacc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3918 cttgttttctggcggacaaattcgtaatggctgtccgtaacaccgcattcccggagaacc 3977
Query: 704 ttctcactggaattaaaagagacatccttccaaaacaatcagtatagatgatagaaattg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 ttctcactggaattaaaagagacatccttccaaaacaatcagtatagatgatagaaattg 4037
Query: 764 atatagacaatccagggttttctatggtaaagttatcacacttttttccttcagagctgn 823
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 atatagacaatccaggg-tttctatggtaaagttatcacacttttttccttcagagctgt 4096
Query: 824 ttttgnnttggtgtattgaatttatacattatacagaatctaattttt-acaatagatct 882
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4097 ttttgttttggtgtattgaatttatacattatacagaatctaatttttcacaatagatct 4156
Query: 883 ttccatgaatcatttaatgaa-tatgacaggttgattggcttgagcaatgaaagactgan 941
| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 4157 tcccatgaatcatttaatgaattatgacaggttgattggcttgagcaatgaaggactgag 4216
Query: 942 aaagaatagcctattcaacagaac 965
||||| ||||||||||||||||||
Sbjct: 4217 aaagagtagcctattcaacagaac 4240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7212
Number of Sequences: 1807
Number of extensions: 7212
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)