BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZA04RM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1244                                                        1092   0.0  

>3x_Contig1244 
          Length = 4689

 Score = 1092 bits (551), Expect = 0.0
 Identities = 717/763 (93%), Gaps = 7/763 (0%)
 Strand = Plus / Plus

                                                                        
Query: 43   cttggcaatgatcctagcacgttttcatcttcaacttcttcctttagctcttcttcatct 102
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 2198 cttggcaatgatcctagcacgtctccatcttcaacttcttcctttagctcttcttcatct 2257

                                                                        
Query: 103  tcgctgtgattaattgaaccattgtcgtcatcactgaaatcgttctccgaatcccagtcg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 tcgctgtgattaattgaaccattgtcgtcatcactgaaatcgttctccgaatcccagtcg 2317

                                                                        
Query: 163  tttctcactttcttttgttgtagcttgaaccttctgacatctgcagaaacattg-tattt 221
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |
Sbjct: 2318 tttctcactttcttttgttgtagcttgaaccttctgacatctgcagaaacatcgatacct 2377

                                                                        
Query: 222  tgtagatcctgcaattttccgatgtcatcgaactgtgccatttcctgtttataatgttct 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 tgtagatcctgcaattttccgatgtcatcgaactgtgccatttcctgtttataatgttct 2437

                                                                        
Query: 282  tcttcgaagttggctagatcttgcatatcccattcatcaaattcatcttcaaattcatct 341
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 tcttcgaagttgtctagatcttgcatatcccattcatcaaattcatcttcaaattcatct 2497

                                                                        
Query: 342  gcaccatcggctttaccactacccaacaactcggcgaaaatatcatcatcgtcttcatct 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 gcaccatcggctttaccactacccaacaactcggcgaaaatatcatcatcgtcttcatct 2557

                                                                        
Query: 402  aaaccctcagcagcgttgctactcttaggcttgatttcgacagctacatcctcattgata 461
            |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2558 aaaccctcagcagcgttgttactcttaggcttgatttcgacagcaacatcctcattgata 2617

                                                                        
Query: 462  acgtatgcatcgtcttctaatgccaccaagacttccctcaaggcaggattcatatcaggc 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2618 acgtatgcatcgtcttctaatgccaccaagacttccctcaaggcaggattcatatcaggc 2677

                                                                        
Query: 522  ttgaaccccacaagttcttccggaatctcttgcatttgatccaaattttcttgcttggca 581
            |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2678 ttgaaccccacaagttctcccggaatctcttgcatttgatccaaatattcttgcttggca 2737

                                                                        
Query: 582  acacctttcacatacatcggctcagcagccttgttctccagatcttgatagtttggtttc 641
            |||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||| | |
Sbjct: 2738 acacctctcacaaacaacggctcagcagccttgttctccagatcttgatagcttggctcc 2797

                                                                        
Query: 642  ataaacagagatttcggtatcctttcacttttttctttttaataggctttttactcttgg 701
            | |||||||||||  || ||||||  |||| || ||| | ||||||||| ||||||||||
Sbjct: 2798 acaaacagagattctgg-atccttcaacttctt-cttctcaataggcttcttactcttgg 2855

                                                                        
Query: 702  ccagaattgataacgga-tgggatgggtcttatcctataggttt-aaatgctttgtataa 759
            |  |||| || |||||| |||||||||||| | || |||||||| ||||||| |||||||
Sbjct: 2856 caggaat-gaaaacggaatgggatgggtctaagccaataggtttcaaatgctgtgtataa 2914

                                                       
Query: 760  ccgaattttgaaccc-caaatggaataccatatagacctgctt 801
             || |||| ||| |  |||||| ||||||||||||| ||||||
Sbjct: 2915 tcgtatttggaatcgtcaaatgtaataccatatagagctgctt 2957


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,193
Number of Sequences: 1807
Number of extensions: 10193
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)