BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC19ZA04RM1.SCF screened BAC_end (969 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1244 1092 0.0 >3x_Contig1244 Length = 4689 Score = 1092 bits (551), Expect = 0.0 Identities = 717/763 (93%), Gaps = 7/763 (0%) Strand = Plus / Plus Query: 43 cttggcaatgatcctagcacgttttcatcttcaacttcttcctttagctcttcttcatct 102 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 2198 cttggcaatgatcctagcacgtctccatcttcaacttcttcctttagctcttcttcatct 2257 Query: 103 tcgctgtgattaattgaaccattgtcgtcatcactgaaatcgttctccgaatcccagtcg 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2258 tcgctgtgattaattgaaccattgtcgtcatcactgaaatcgttctccgaatcccagtcg 2317 Query: 163 tttctcactttcttttgttgtagcttgaaccttctgacatctgcagaaacattg-tattt 221 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct: 2318 tttctcactttcttttgttgtagcttgaaccttctgacatctgcagaaacatcgatacct 2377 Query: 222 tgtagatcctgcaattttccgatgtcatcgaactgtgccatttcctgtttataatgttct 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2378 tgtagatcctgcaattttccgatgtcatcgaactgtgccatttcctgtttataatgttct 2437 Query: 282 tcttcgaagttggctagatcttgcatatcccattcatcaaattcatcttcaaattcatct 341 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2438 tcttcgaagttgtctagatcttgcatatcccattcatcaaattcatcttcaaattcatct 2497 Query: 342 gcaccatcggctttaccactacccaacaactcggcgaaaatatcatcatcgtcttcatct 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2498 gcaccatcggctttaccactacccaacaactcggcgaaaatatcatcatcgtcttcatct 2557 Query: 402 aaaccctcagcagcgttgctactcttaggcttgatttcgacagctacatcctcattgata 461 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2558 aaaccctcagcagcgttgttactcttaggcttgatttcgacagcaacatcctcattgata 2617 Query: 462 acgtatgcatcgtcttctaatgccaccaagacttccctcaaggcaggattcatatcaggc 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2618 acgtatgcatcgtcttctaatgccaccaagacttccctcaaggcaggattcatatcaggc 2677 Query: 522 ttgaaccccacaagttcttccggaatctcttgcatttgatccaaattttcttgcttggca 581 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2678 ttgaaccccacaagttctcccggaatctcttgcatttgatccaaatattcttgcttggca 2737 Query: 582 acacctttcacatacatcggctcagcagccttgttctccagatcttgatagtttggtttc 641 |||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||| | | Sbjct: 2738 acacctctcacaaacaacggctcagcagccttgttctccagatcttgatagcttggctcc 2797 Query: 642 ataaacagagatttcggtatcctttcacttttttctttttaataggctttttactcttgg 701 | ||||||||||| || |||||| |||| || ||| | ||||||||| |||||||||| Sbjct: 2798 acaaacagagattctgg-atccttcaacttctt-cttctcaataggcttcttactcttgg 2855 Query: 702 ccagaattgataacgga-tgggatgggtcttatcctataggttt-aaatgctttgtataa 759 | |||| || |||||| |||||||||||| | || |||||||| ||||||| ||||||| Sbjct: 2856 caggaat-gaaaacggaatgggatgggtctaagccaataggtttcaaatgctgtgtataa 2914 Query: 760 ccgaattttgaaccc-caaatggaataccatatagacctgctt 801 || |||| ||| | |||||| ||||||||||||| |||||| Sbjct: 2915 tcgtatttggaatcgtcaaatgtaataccatatagagctgctt 2957 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,193 Number of Sequences: 1807 Number of extensions: 10193 Number of successful extensions: 114 Number of sequences better than 1.0e-20: 1 length of query: 969 length of database: 10,358,551 effective HSP length: 16 effective length of query: 953 effective length of database: 10,329,639 effective search space: 9844145967 effective search space used: 9844145967 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)