BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA06RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig701 339 6e-93
>3x_Contig701
Length = 1480
Score = 339 bits (171), Expect = 6e-93
Identities = 215/226 (95%), Gaps = 4/226 (1%)
Strand = Plus / Minus
Query: 753 gaaacttttttaagcaagaaaaaaagctacaaagagaaggaagaacttgttttctgtgaa 812
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1480 gaaactttttaaagcaagaaaaaaagctacaaagagaaggaagaatttggtttctgtgaa 1421
Query: 813 tctaagttcgcatttcactatcgatatctgaacagctaccctttaatttatctgttgaga 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 tctaagttcgcatttcactatcgatatctgaacagctaccctttaatttatctgttgaga 1361
Query: 873 a-caggtgaatacagtttcgcagacatacactacgaaagtatagtcagtagctaaaagat 931
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1360 accaggtgaatacagtttcgcagacatacactacgaaagtatagtcagtagctaaaaagt 1301
Query: 932 taaaa--gaaaaaatggacttactaaaggccc-cagcatattacac 974
||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct: 1300 taaaaagaaaaaaatagacttactaaaggcccacagcatattacac 1255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,823
Number of Sequences: 1807
Number of extensions: 16823
Number of successful extensions: 306
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)