BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA08RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1503 0.0
>3x_Contig1645
Length = 12736
Score = 1503 bits (758), Expect = 0.0
Identities = 834/849 (98%), Gaps = 8/849 (0%)
Strand = Plus / Plus
Query: 54 agcagagatcattcttcaacttcgcattctctactctcaagttttctatctcttccagga 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11664 agcagagatcattcttcaacttcgcattctctactctcaagttttctatctcttccagga 11723
Query: 114 gagattcattggatctttccgtttctgtcatatctccgtacggtctctagtacagttctg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11724 gagattcattggatctttccgtttctgtcatatctccgtacggtctctagtacagttctg 11783
Query: 174 ctggacttc-aaatttagacaagtgttgcaggcatcatattgtttt-tataatcagtgct 231
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11784 ctggacttcgaaatttagacaagtgttgcaggcatcatattggcaggtataatcagtgct 11843
Query: 232 cgttaaaaggatgccttcgtgtgaacttgaatttgatttttcttttcttttgtaaatcat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11844 cgttaaaaggatgccttcgtgtgaacttgaatttgatttttcttttcttttgtaaatcat 11903
Query: 292 agtgtcagtttatgtaatggtaagagctgcattgactttttaactcaaacacacggaaaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904 agtgtcagtttatgtaatggtaagagctgcattgactttttaactcaaacacacggaaaa 11963
Query: 352 gcaacccactagccgccaagtttgatcatttaagcccaatagtatttacctttcaaaata 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11964 gcaacccactagccgccaagtttgatcatttaagcccaatagtatttacctttcaaaata 12023
Query: 412 tctcatgcgacaggtcattatgatgtttatgaataagtgtgtaattatctatttacgtct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12024 tctcatgcgacaggtcattatgatgtttatgaataagtgtgtaattatctatttacgtct 12083
Query: 472 gtttctgcttaataaataaagtttttaagtagcgaagttgaaagaaacaggtaacaacga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12084 gtttctgcttaataaataaagtttttaagtagcgaagttgaaagaaacaggtaacaacga 12143
Query: 532 gcacaacagttaacagaattgaccaatatgttacactttcattagtcacctcagtcattt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12144 gcacaacagttaacagaattgaccaatatgttacactttcattagtcacctcagtcattt 12203
Query: 592 cacgaaacacagcttctttctttttgatgtcatcttgttcgttctttatactcaatagcc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12204 cacgaaacacagcttctttctttttgatgtcatcttgttcgttctttatactcaatagcc 12263
Query: 652 tttcattcaattgatatattctgtctttaagagacaccattgcagagtttctcctacttt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12264 tttcattcaattgatatattctgtctttaagagacaccattgcagagtttctcctacttt 12323
Query: 712 gncatgaaattgcactaccgatatctatcgcatggtatagcttgatacgtctggtactat 771
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12324 gcaatgaaattgcactaccgatatctatcgcatggtatagcttgatacgtctggtactat 12383
Query: 772 cagggtagtatgggttct-aacaaa-tttatgctctcctttttctactgcactgaatgaa 829
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12384 cagggtagtat-ggttctaaacaaattttatgctctcctttttctactgcactgaatgaa 12442
Query: 830 aaaggtccttgtgggcaccgctttctgagcccagacaacgatggttgttatcaaaatgtt 889
|||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 12443 aaaggtccttgt-ggcaccgctttctgagccaagac-acgatggttgttatc-aaatgtt 12499
Query: 890 tcatcaatt 898
|||||||||
Sbjct: 12500 tcatcaatt 12508
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8122
Number of Sequences: 1807
Number of extensions: 8122
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)