BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA09RM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1523 1582 0.0
>3x_Contig1523
Length = 10049
Score = 1582 bits (798), Expect = 0.0
Identities = 850/858 (99%), Gaps = 7/858 (0%)
Strand = Plus / Plus
Query: 45 cttctcagttttcgaactgatgttggttcaaaacgtaattttttgtttatacttttatga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 cttctcagttttcgaactgatgttggttcaaaacgtaattttttgtttatacttttatga 3099
Query: 105 aatggaaaaaatagaaaagatgaatcaattgtcagtatgaacaaagaatatgttatatga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aatggaaaaaatagaaaagatgaatcaattgtcagtatgaacaaagaatatgttatatga 3159
Query: 165 ttcagaaaatatgcatctttaacttactgcgcaatttatgatctgatagcttgaatctat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 ttcagaaaatatgcatctttaacttactgcgcaatttatgatctgatagcttgaatctat 3219
Query: 225 ttactcatagcacgctactgtatttgaaacccaaaaacaagagttggaaagaaagagcat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 ttactcatagcacgctactgtatttgaaacccaaaaacaagagttggaaagaaagagcat 3279
Query: 285 aaaatactaggaaacatgcgtgttttttcagggtttgctaccataatattaacggtaact 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 aaaatactaggaaacatgcgtgttttttcagggtttgctaccataatattaacggtaact 3339
Query: 345 tttgctctactagcgaaagcagtaccagaaagcccacctgacggattatcatgggaagaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 tttgctctactagcgaaagcagtaccagaaagcccacctgacggattatcatgggaagaa 3399
Query: 405 tggcacatgagagatgagcacggtataacaaagtacactcctgaagaattctttgacatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 tggcacatgagagatgagcacggtataacaaagtacactcctgaagaattctttgacatt 3459
Query: 465 catgatttaggtagcaaaggatatttggatgccaccgacattattaccatgtatgggcta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3460 catgatttaggtagcaaaggatatttggatgccaccgacattattaccatgtatgggcta 3519
Query: 525 cacagagacaccatcgtaggtaaaggtgacggaatgggacagaacgatgagagtcaggta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3520 cacagagacaccatcgtaggtaaaggtgacggaatgggacagaacgatgagagtcaggta 3579
Query: 585 attgatgactctttgcgtgaaggagccgttaaaattgtgatggcattgttggatgtagat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3580 attgatgactctttgcgtgaaggagccgttaaaattgtgatggcattgttggatgtagat 3639
Query: 645 gacgataccaggatcactcgcaaggaatatctagcatttgcagccaatgggaacaaactt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3640 gacgataccaggatcactcgcaaggaatatctagcatttgcagccaatgggaacaaactt 3699
Query: 705 gccgatcttggagttggtgtgggacatcatggtgatttcgaaactgaatatgagatgcat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3700 gccgatcttggagttggtgtgggacatcatggtgatttcgaaactgaatatgagatgcat 3759
Query: 765 cattggaaccagtaccacaaggatcaagatccggacatcaagaaacgttcacaaggaaag 824
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 3760 cattggaaccagtaccacaaggatcaagatccggacatcaag-aacgttcacaagg-aag 3817
Query: 825 atgtcgagcatgagtttgctacacccacgaacatgtaggtagaagcggcttgaaaatgga 884
|||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 3818 atgtcgagcatgag-ttgctaca-ccacgaacatg-aggtagaagcggc-tgaaaatgga 3873
Query: 885 cctgttagttgcagcaaa 902
|||| ||| |||||||||
Sbjct: 3874 cctg-taggtgcagcaaa 3890
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7294
Number of Sequences: 1807
Number of extensions: 7294
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)