BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA11RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1675 0.0
>3x_Contig1774
Length = 27771
Score = 1675 bits (845), Expect = 0.0
Identities = 897/909 (98%), Gaps = 5/909 (0%)
Strand = Plus / Minus
Query: 56 agggacagtggaccaaagaggtccgagatctcgataacggccaacaaatttggaaatgcg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 agggacagtggaccaaagaggtccgagatctcgataacggccaacaaatttggaaatgcg 3668
Query: 116 gaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 gaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttga 3608
Query: 176 acgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagacccg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 acgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagacccg 3548
Query: 236 atattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactgg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 atattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactgg 3488
Query: 296 aacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 aacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaac 3428
Query: 356 agattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaagaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 agattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaagaa 3368
Query: 416 aaaggcacgattggagcaacaccaaatctttatggtgaaagaaaaaggtaaaaaagcacg 475
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3367 aaaggcacgattggagcaacaccaaatctttatggtgaaag-aaaaggtaaaaaagcacg 3309
Query: 476 ttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 ttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaat 3249
Query: 536 atgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 atgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatca 3189
Query: 596 atacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattctt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 atacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattctt 3129
Query: 656 cgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaatt 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 cgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaatt 3069
Query: 716 tccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcagtggcctaggg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 tccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcagtggcctaggg 3009
Query: 776 tagatacaaagacatattcactaaattacttcacatgccaaggcttctctgtgacangtt 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3008 tagatacaaagacatattcactaaattacttcacatgccaaggcttctctgtgacagttt 2949
Query: 836 ccatgcttttttgcagtcctctctgtttc-atagatgt-tatatgnacagaaaacacgtg 893
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 2948 ccatgcttttttgcagtcctctctgtttcaatagatgtatatatgaacagaaaacacgtg 2889
Query: 894 tatcacgtgatcacaaa-ctttgcccgttnnttttcccttttcctagc-attcctgtcag 951
||||||||||||||||| ||||||||||| ||| ||||||||||||| |||| ||||||
Sbjct: 2888 tatcacgtgatcacaaacctttgcccgtttttttccccttttcctagcaattcttgtcag 2829
Query: 952 ccgcgcccc 960
|||||||||
Sbjct: 2828 ccgcgcccc 2820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6936
Number of Sequences: 1807
Number of extensions: 6936
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)