BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZA12RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1233 1176 0.0
3x_Contig1442 504 e-142
>3x_Contig1233
Length = 4604
Score = 1176 bits (593), Expect = 0.0
Identities = 635/649 (97%), Gaps = 1/649 (0%)
Strand = Plus / Minus
Query: 329 ctgcaacaatattagaatgctttaagatgacaccctttggatcaccagtggaaccggaag 388
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4585 ctgcaacaatattagaatgctttaagatgacaccctttggatcaccagtgtttttggaag 4526
Query: 389 tgtacatgatagctgacaaatcttcaggggctggaggatgtggttcaatttcatctctag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 tgtacatgatagctgacaaatcttcaggggctggaggatgtggttcaatttcatctctag 4466
Query: 449 ccttcttacccaattcgatgacttcatccatggaaagaatcttaatgtctggtctaacct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ccttcttacccaattcgatgacttcatccatggaaagaatcttaatgtctggtctaacct 4406
Query: 509 ctttaatcttagccaatgcgtctgcagcgtccttgtaaagcttaccctcatcccttttat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 ctttaatcttagccaatgcgtctgcagcgtccttgtaaagcttaccctcatcccttttat 4346
Query: 569 cctctgggttcaactcttcagaaatgattagatatttcaagtttgtagcctcttgtacag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 cctctgggttcaactcttcagaaatgattagatatttcaagtttgtagcctcttgtacag 4286
Query: 629 cgttatgcaacctacacaacaatgcattgtcaacaaacatacccttagaagcggtttgaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 cgttatgcaacctacacaacaatgcattgtcaacaaacatacccttagaagcggtttgaa 4226
Query: 689 ccatggaatggattaaacccttttcacccaaagtatcatatgcagtcaccacaggaatgg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 ccatggaatggattaaacccttttcacccaaagtatcatatgcagtcaccacaggaatgg 4166
Query: 749 cctgagactgcgtagccaaaaatgtcttcatccatctatgagatgttgatgcanagatgt 808
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4165 cctgagactgcgtacgcaaaaatgtcttcatccatctatgagatgttgatgcaaagatgt 4106
Query: 809 gcaatntatcctcagaagccggttgtnaccccaatttcactaacccacgaccataatcat 868
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4105 gcaatttatcctcagaagccggttgtaaccccaatttcactaacccacgaccataatcat 4046
Query: 869 gaactaactcattcaactccttataagtagtgtacttgtacgaactcaattcatagaaaa 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 gaactaactcattcaactccttataagtagtgtacttgtacgaactcaattcatagaaaa 3986
Query: 929 accacttctttctcaacttctttgtccttggcgncaatcttcttagtga 977
||||| || ||||||||||||||||||||| || |||||||||||||||
Sbjct: 3985 accac-tccttctcaacttctttgtccttgccgtcaatcttcttagtga 3938
>3x_Contig1442
Length = 8270
Score = 504 bits (254), Expect = e-142
Identities = 290/298 (97%), Gaps = 3/298 (1%)
Strand = Plus / Plus
Query: 44 cttgttaatttgtgccaagatcctttttctaacactttcccaaacagcggcaacaccaac 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7974 cttgttaatttgtgccaagatcccctttctaacactttcccaaacagcggcaacaccaac 8033
Query: 104 catgatagttggttggaactccttgatgtcaccttggcagttgcgaacagatgcatcggt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8034 catgatagttggttggaactccttgatgtcaccttggcagttgcgaacagatgcatcggt 8093
Query: 164 caacgtcttaacgttcgcataaccaagtgtagcgccccagtaaaaagtgatctaattttt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8094 caacgtcttaacgttcgcataaccaagtgtagcgccccagtaaaaagtgatc-aattcga 8152
Query: 224 aagccaactcaaaaatatgagcca-ggggcaaaaatgcaatgacacgatctgt-gtgaca 281
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 8153 aagccaactcaaaaatatgagccagggggcaaaaatgcaatgacacgatctgtagtgaca 8212
Query: 282 aacgtgttctggtctgttactaataatggaagagataccgcctagacctgcaacaata 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8213 aacgtgttctggtctgttactaataatggaagagataccgcctagacctgcaacaata 8270
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6116
Number of Sequences: 1807
Number of extensions: 6116
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)