BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB01FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1600 0.0
>3x_Contig1807
Length = 66587
Score = 1600 bits (807), Expect = 0.0
Identities = 845/857 (98%), Gaps = 1/857 (0%)
Strand = Plus / Plus
Query: 84 tgtaacctcatggttcttgaaatacgaaaatacatcttggatcatttgagctcttaaatg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44123 tgtaacctcatggttcttgaaatacgaaaatacatcttggatcatttgagctcttaaatg 44182
Query: 144 acaaccacaatcggtaacatgagcatcgaagaccaaataaccgcgatcagaggatgaaat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44183 acaaccacaatcggtaacatgagcatcgaagaccaaataaccgcgatcagaggatgaaat 44242
Query: 204 ggctattccgttttgaagaagtgcttgaaagtctgcgaatgcttcattcaaatcatcgca 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44243 ggctattccgttttgaagaagtgcttgaaagtctgcgaatgcttcattcaaatcatcgca 44302
Query: 264 caaaagaatcaaacctatcagatgacctaccaattggttagatggaatcgatgttttctt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44303 caaaagaatcaaacctatcagatgacctaccaattggttagatggaatcgatgttttctt 44362
Query: 324 gtcgtttcccgctgtcaaagtaacacctaagcgttggaaaagcagttggtacatttttaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44363 gtcgtttcccgctgtcaaagtaacacctaagcgttggaaaagcagttggtacatttttaa 44422
Query: 384 ttttcttggtgcatgccatcgttctgatgatatacaagacaacagaatttgttaataaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44423 ttttcttggtgcatgccatcgttctgatgatatacaagacaacagaatttgttaataaga 44482
Query: 444 ggagcctctctaaattgttttcattcaatattcacttgctttatgtattctcgccaatga 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44483 ggagcctctctaaattgttttcattcaatattcacttgctttatgtattctcgccaatga 44542
Query: 504 ttatagtgtctgaggactgatcacttcatcaaataaaaaagaaattgatattaaaattgt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44543 ttatagtgtctgaggactgatcacttcatcaaataaaaaagaaattgatattaaaattgt 44602
Query: 564 gctgcccaaaactctcaacatgttcttgcaatctttgttgtcaaattgatgcatagcgtg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44603 gctgcccaaaactctcaacatgttcttgcaatctttgttgtcaaattgatgcatagcgtg 44662
Query: 624 ttcaacaacaaccctttttcacagtacatggcattttccaccgttgtatcatgaagcaaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44663 ttcaacaacaaccctttttcacagtacatggcattttccaccgttgtatcatgaagcaaa 44722
Query: 684 gttgtatttagctctctctctttgtcaacatttactgtcattgccagcttatcagtctaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44723 gttgtatttagctctctctctttgtcaacatttactgtcattgccagcttatcagtctaa 44782
Query: 744 attgtcggaggtttttttccataaaaggaaattcggacagtacagtataatcatcttcag 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44783 attgtcggaggtttttttccataaaaggaaattcggacagtacagtataatcatcttcag 44842
Query: 804 aactgcaggacgtaatcaactgcatgatgcatgtaaaacactggacattcgacattaaaa 863
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 44843 aactgcaggacgtaatcaactgcatgatgcatgaaaaacactggacattcgacattaaaa 44902
Query: 864 agctaaagtacaaccctttcaaagttactcttggtaaacggtgcgatttcaaatnncaca 923
|||||||||||||||||| || | ||||| ||||||||| |||||| ||||| |||
Sbjct: 44903 agctaaagtacaacccttcaaagggtactc-tggtaaacgtggcgattccaaatccaaca 44961
Query: 924 caatgacttacacctca 940
|||||||||||||||||
Sbjct: 44962 caatgacttacacctca 44978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)