BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB01RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1491 0.0
>3x_Contig1488
Length = 9807
Score = 1491 bits (752), Expect = 0.0
Identities = 809/824 (98%), Gaps = 4/824 (0%)
Strand = Plus / Minus
Query: 44 gcttgatagcgacacactacgagtacttatcggctccaaagagtacataccggatagat- 102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gcttgatagcgacacactacgagtacttatcggctccaaagagtacataccggatagatc 835
Query: 103 aacttttgacaatatgctgaaaggagtcgttttccagtatgacaatgtgaaagacgataa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aacttttgacaatatgctgaaaggagtcgttttccagtatgacaatgtgaaagacgataa 775
Query: 163 caaagtaccgaaggtcggtccatcgactaaaagcttaatgttgaagtggagtgaacttta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 774 caaagtaccgaaggtcggtccatcgactaaaagcttaatgttgaagtggagtgaacagta 715
Query: 223 ttggccgttaatttggagaggaaatcctaatgaccagatattaaacgactatatatttga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttggccgttaatttggagaggaaatcctaatgaccagatattaaacgactatatatttga 655
Query: 283 catgacagagattcggtcattgttaaccaagatagcagaagagtctcgagcaatccgaga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 catgacagagattcggtcattgttaaccaagatagcagaagagtctcgagcaatccgaga 595
Query: 343 ttcggatagcatgcaacttccaatagtatcggcattcgttaatccaaaatctggtaaaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcggatagcatgcaacttccaatagtatcggcattcgttaatccaaaatctggtaaaat 535
Query: 403 tataatatcaaaggattatagacatagtggatctcccctcgatcacagtgttatggtcgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tataatatcaaaggattatagacatagtggatctcccctcgatcacagtgttatggtcgg 475
Query: 463 aataaatgaggtagctaaagaagagcaggagagaagagaccgtgtccaaaacggtaccgc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aataaatgaggtagctaaagaagagcaggagagaagagaccgtgtccaaaacggtaccgc 415
Query: 523 gtcagaaaaagatatacatcaaggggaaacttatctctgcttagattttgacgtatacac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtcagaaaaagatatacatcaaggggaaacttatctctgcttagattttgacgtatacac 355
Query: 583 cagtcatgagccgtgctcaatgtgcagcatggcactaattcattccagagtgaaaagatg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagtcatgagccgtgctcaatgtgcagcatggcactaattcattccagagtgaaaagatg 295
Query: 643 catattcatcaatcctatgtcggtcagcggtgcactgaaacctgattcaggtgatggata 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 catattcatcaatcctatgtcggtcagcggtgcactgaaacctgattcaggtgatggata 235
Query: 703 ctgcatgcattcaaacanagatttgaactccaagtatgaagtctttcaatgggtttggtg 762
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 234 ctgcatgcattcaaacaaagatttgaactccaagtatgaagtcttccaatggg-ttggtg 176
Query: 763 aagaattggaagtgcctggaatagattctacccgtgtgttcttgagcttttcaactagaa 822
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 175 aagaattggaagtgcctggaatagattcta-ccgtgtgttcttgagcttttcaactagaa 117
Query: 823 ggtgggttgggttncatgtncggttattatttttgncacattat 866
||| |||||| || ||||| | ||||||| ||||| |||||||
Sbjct: 116 ggttggttggtttccatgtcc-gttattaattttggaacattat 74
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6141
Number of Sequences: 1807
Number of extensions: 6141
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)