BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB03FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1576 0.0
>3x_Contig1680
Length = 12597
Score = 1576 bits (795), Expect = 0.0
Identities = 864/878 (98%), Gaps = 7/878 (0%)
Strand = Plus / Minus
Query: 89 ttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttctgca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6802 ttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttctgca 6743
Query: 149 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 6683
Query: 209 cattattaactca-ttatcagccctcaattttaatgtttcgatcagtttcctttcactgt 267
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6682 cattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttcactgt 6623
Query: 268 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6622 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 6563
Query: 328 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6562 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 6503
Query: 388 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6502 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 6443
Query: 448 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 6383
Query: 508 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6382 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 6323
Query: 568 acaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccgtagg 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6322 acaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccgta-g 6264
Query: 628 aagcggttggcaagtagattggtctagccaaatctaattccttcacaaggacaccaggtc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6263 aagcggttggcaagtagattggtctagccaaatctaattccttcacaaggacaccaggtc 6204
Query: 688 tcaagtcgaagttcttcttgatgatttcaataacttcttcatctgggatggtagcggtac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6203 tcaagtcgaagttcttcttgatgatttcaataacttcttcatctgggatggtagcggtac 6144
Query: 748 cataggtgtcgacatgcaaggataaaggttcagcgataccgatagcgtaagagaattgga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6143 cataggtgtcgacatgcaaggataaaggttcagcgataccgatagcgtaagagaattgga 6084
Query: 808 cttgaactctcttacagataccagcgtggaccaaagactttagc-acccatctagcggcg 866
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 6083 cttgaactctcttacagataccagcgtggaccaaagac-ttagcaacccatctagcggcg 6025
Query: 867 taaagcagcggaacggtcgaccttggnagtatcctttaccggagaaagcaccatcaccga 926
| |||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||
Sbjct: 6024 t-aagcagcggaacggtcgaccttgg-agtaatccttaccggagaaagcaccaccaccga 5967
Query: 927 cagcagaagcaccaccg-nagcatcgacgattatcttt 963
||||||||||||||||| |||||||||||| ||||||
Sbjct: 5966 cagcagaagcaccaccgtaagcatcgacgataatcttt 5929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7263
Number of Sequences: 1807
Number of extensions: 7263
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)