BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB03RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1312 1699 0.0
>3x_Contig1312
Length = 5472
Score = 1699 bits (857), Expect = 0.0
Identities = 909/926 (98%), Gaps = 1/926 (0%)
Strand = Plus / Plus
Query: 43 gcttcgaaccaaaagaagcctctatccaaaagagttttgcctgaaaaccaagcggtttca 102
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 3925 gcttcgaaccaaaagaagcctcgaaccaaaagagttttgcctgaaaaccaagcggtttca 3984
Query: 103 ctttctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 ctttctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacg 4044
Query: 163 tacttccgatttattcgagcagagatattgatagcctttgttttttgtcgttattatttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4045 tacttccgatttattcgagcagagatattgatagcctttgttttttgtcgttaagatttg 4104
Query: 223 aaaacaaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 aaaacaaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaaga 4164
Query: 283 ttcgtacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 ttcgtacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagtt 4224
Query: 343 agtacaagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 agtacaagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgc 4284
Query: 403 acaatcaaagtaatacaggttggtgtcgtcttcctcatatattcatttggttgaagtact 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 acaatcaaagtaatacaggttggtgtcgtcttcctcatatattcatttggttgaagtact 4344
Query: 463 tgagcttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttctg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 tgagcttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttctg 4404
Query: 523 ttcctaaacctccaactgaacctaatactggaggaacacccttgagaagaggccacagac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 ttcctaaacctccaactgaacctaatactggaggaacacccttgagaagaggccacagac 4464
Query: 583 ataaaagatcgtttgcaatttcgggtgactttgaattcttaaaaaaggaccctcttcgag 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ataaaagatcgtttgcaatttcgggtgactttgaattcttaaaaaaggaccctcttcgag 4524
Query: 643 acgcgacttttccaattggttcagaagccaattatgcggtggattctagagacgcaactc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 acgcgacttttccaattggttcagaagccaattatgcggtggattctagagacgcaactc 4584
Query: 703 cagtgtctgtgtgtgatgtagcagagttgaagacagacctgacgtttaatacagctagat 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 cagtgtctgtgtgtgatgtagcagagttgaagacagacctgacgtttaatacagctagat 4644
Query: 763 ctgcatctactcactttttaacaagccccagattctttatcaccgaagaaccaaaattca 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 ctgcatctactcactttttaacaagccccagattctttatcaccgaagaaccaaaattca 4704
Query: 823 ctggtggnatcaaagacgttccggacgcccatatcaatttggacgatgcgtttgaaaacg 882
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 4705 ctggtggattcaaagacgttccggacgccataatcaatttggacgatgcg-ttgaaaacg 4763
Query: 883 cgggccagatcatttcaatcacatagacgcacanaatctgcttcagcagacctttaactt 942
||| |||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 4764 cggcccagatcattcaaatcacatagacgcacagaatctgctccagcagaccttcaactt 4823
Query: 943 tcgttcaaccttgnaagaaagctaaa 968
||||||||||||| ||||||||||||
Sbjct: 4824 tcgttcaaccttgaaagaaagctaaa 4849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7268
Number of Sequences: 1807
Number of extensions: 7268
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)