BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB04RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1697 0.0
>3x_Contig1477
Length = 9322
Score = 1697 bits (856), Expect = 0.0
Identities = 897/910 (98%), Gaps = 1/910 (0%)
Strand = Plus / Plus
Query: 45 gctttctcaaagaaagtcaatgaatcaataagtgaaataatggacaaaattggtggattc 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 340 gctttctcaaagaaagtcaatgaaacaataagtgaaataatggacaaaattggtggattc 399
Query: 105 catctgctggcttccaagattgtgacagagttagaaaaatgtgaggaatacttatctatc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 catctgctggcttccaagattgtgacagagttagaaaaatgtgaggaatacttatctatc 459
Query: 165 ttccaaaagattgctaatttagtattcgtttataaggaatcttgcataaaaaagattgaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttccaaaagattgctaatttagtattcgtttataaggaatcttgcataaaaaagattgaa 519
Query: 225 caagtgcaacaactctgtgagttttacgataagttcaaattagggtataaaaaccttcta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caagtgcaacaactctgtgagttttacgataagttcaaattagggtataaaaaccttcta 579
Query: 285 cgagaaagagacagacggaaagccactgcgttacaaatggagaaaatattaaaggaatgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cgagaaagagacagacggaaagccactgcgttacaaatggagaaaatattaaaggaatgt 639
Query: 345 caggagaaactacaggcactgagtgatgctgacttggaccaacgccagcaatttttactt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 caggagaaactacaggcactgagtgatgctgacttggaccaacgccagcaatttttactt 699
Query: 405 gaaaatggtgactatcttcccgaaaacatctggccaggttatatcgacgatatggaatcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaaaatggtgactatcttcccgaaaacatctggccaggttatatcgacgatatggaatcg 759
Query: 465 atgtatagtttcgaatatagcatacataatgtaccgaattgacggtattgtgttattatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atgtatagtttcgaatatagcatacataatgtaccgaattgacggtattgtgttattatt 819
Query: 525 gatacataagtatacatatttacaggtataaattatcttttacatcgttatggttaacat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gatacataagtatacatatttacaggtataaattatcttttacatcgttatggttaacat 879
Query: 585 tactttctgtggttcaaaaattgcaaggtatcatttataatttttctcaagatcgacgaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tactttctgtggttcaaaaattgcaaggtatcatttataatttttctcaagatcgacgaa 939
Query: 645 cctttcaaagacatcatcgatagttagtaaatccactttcttcgactccctggttctaat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 cctttcaaagacatcatcgatagttagtaaatccactttcttcgactccctggttctaat 999
Query: 705 cgccaccttgcctgcttcaacttctttgtcaccaatcattantatataagaaatatgctt 764
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1000 cgccaccttgcctgcttcaacttctttgtcaccaatcattataatataagaataatgctt 1059
Query: 765 cttgatggcttctctaattcttttacttacagattcatctcttgcatccatatcaacaga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 cttgatggcttctctaattcttttacttacagattcatctcttgcatccatatcaacaga 1119
Query: 825 gaaatggaagctgntgagntggaaattggctttttggatcactattttcaccacgtaatg 884
||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1120 gaaatggaagctgttgag-tggaattgggctttttggatcactattttcaccacgtaatg 1178
Query: 885 agttgactgtcttgaaaagccattccattatcttctcatcttcagtctttactgggatga 944
||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct: 1179 agttgactgtcttgaaagccaattccattatcttctcatcttcagtcttcactgggatga 1238
Query: 945 ccatacattg 954
||||||||||
Sbjct: 1239 ccatacattg 1248
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7991
Number of Sequences: 1807
Number of extensions: 7991
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)