BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB06FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1663 0.0
>3x_Contig1528
Length = 10737
Score = 1663 bits (839), Expect = 0.0
Identities = 870/880 (98%), Gaps = 1/880 (0%)
Strand = Plus / Plus
Query: 86 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattgtcaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattgtcaca 2183
Query: 146 ttagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 ttagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagca 2243
Query: 206 agggccaaagaactatgaactcgtcacgctaccagttttagaatacagtgccctcaaaaa 265
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 agggccaaagaacta-gaactcgtcacgctaccagttttagaatacagtgccctcaaaaa 2302
Query: 266 accgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctataga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 accgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctataga 2362
Query: 326 aaaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 aaaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggc 2422
Query: 386 gaaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 gaaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcga 2482
Query: 446 ggatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 ggatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagct 2542
Query: 506 caacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 caacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctc 2602
Query: 566 cggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 cggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgt 2662
Query: 626 gcctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 gcctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatct 2722
Query: 686 catgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 catgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagat 2782
Query: 746 taagaaagaattggagacgccaaccttgaccagggaacaaatagttgagcatgccgctga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2783 taagaaagaattggagacgccaaccttgaccagggaacaaatagttgagcatgccgctga 2842
Query: 806 tttcaatttgatagctntagatttaacggagtacaaacgtttgaagaagggttcgtattt 865
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 tttcaatttgatagctttagatttaacggagtacaaacgtttgaagaagggttcgtattt 2902
Query: 866 gatgggatacgacaatgacactgattctgnagaagatgaagaggaagaagaagacgccca 925
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 2903 gatggataacgacaatgacactgattctgaagaagatgaagaggaagaagaagacgcaga 2962
Query: 926 ggtcgntgactctgagaaaaaacaattaaacaaagctgct 965
||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2963 ggtcgttgactctgagataaaacaattaaacaaagctgct 3002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7467
Number of Sequences: 1807
Number of extensions: 7467
Number of successful extensions: 200
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)