BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB06RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1004 1505 0.0
3x_Contig970 571 e-163
>3x_Contig1004
Length = 3994
Score = 1505 bits (759), Expect = 0.0
Identities = 827/843 (98%), Gaps = 5/843 (0%)
Strand = Plus / Minus
Query: 110 atatatatataatgaatgaataccctcccgattcgtgggtagtgcaaatcagccgtctat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 atatatatataatgaatgaataccctcccgattcgtgggtagtgcaaatcagccgtctat 3101
Query: 170 tcagagtctgatgacgattccgaggatgaggatgtttgtttgctgtcactggaggtttgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 tcagagtctgatgacgattccgaggatgaggatgtttgtttgctgtcactggaggtttgt 3041
Query: 230 gaagattccggcacatcagcaaacttgatctttttccctccagtagcagatttagccacc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 gaagattccggcacatcagcaaacttgatctttttccctccagtagcagatttagccacc 2981
Query: 290 gtatcttcttctgtattaccagtagaacttgtgctggagggttccatctccattacttga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gtatcttcttctgtattaccagtagaacttgtgctggagggttccatctccattacttga 2921
Query: 350 ggtggtagacctttgaaatctctttcgactcttttcagctgcgcaagagcactggaaagc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ggtggtagacctttgaaatctctttcgactcttttcagctgcgcaagagcactggaaagc 2861
Query: 410 tgtgtatctagagccatttcatcggcactaatgccaccagaagttactgctccctgggtt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 tgtgtatctagagccatttcatcggcactaatgccaccagaagttactgctccctgggtt 2801
Query: 470 gtagaagctccgcttgacgctagtgtcacgcctggtactgattccttttcggcaatgaaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 gtagaagctccgcttgacgctagtgtcacgcctggtactgattccttttcggcaatgaaa 2741
Query: 530 cttgctaggaattgtagtacttcgtctattagataggtatgttggcgtgcccaccgtatg 589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2740 cttgctaggaattgtagtacttcgtct-ttagataggtatgttggcgtgcccaccgtatg 2682
Query: 590 taccacaacgggcgtgttcaaagtggagtttgctggtcttctagttccccttagcatggt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2681 taccacaacgggcgtgttcaaagtggagtttgctggtcttctagttccccttagcatggt 2622
Query: 650 atacgtggttgttcgttggagtgcgatgaatcaaatcagcatctatatatttacccaacc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 atacgtggttgttcgttggagtgcgatgaatcaaatcagcatctatatatttacccaacc 2562
Query: 710 tttggctatctcatctcatctcatctcatctcatcgcattatttcgattcaggttttgtc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 tttggctatctcatctcatctcatctcatctcatcgcattatttcgattcaggttttgtc 2502
Query: 770 tctcgaa-aatttttcagctgaggcacgggtaactcaggcatgtttcttcgtgccttgcg 828
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2501 tctcgaagaatttttcagctgaggcacgggtaactcaggcatgtttctccgtgccttgcg 2442
Query: 829 atgttaacaaaatatgc-agtcacgtgtgttacgtgacttgcggcgaccatgcggttgaa 887
||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 2441 atgttaacaaaatatgcaagtcacgtgtgtcacgtgacttgcggcgacaatgcggttgat 2382
Query: 888 gtgtaa-aaaatgtggttttcgttttcgttacccggcc-cctgttattacctaatacctt 945
|||||| | |||| ||||| |||||||||||||||||| | ||| || |||||||||| |
Sbjct: 2381 gtgtaagataatggggtttccgttttcgttacccggccgcatgtcatcacctaataccat 2322
Query: 946 ttt 948
|||
Sbjct: 2321 ttt 2319
>3x_Contig970
Length = 3320
Score = 571 bits (288), Expect = e-163
Identities = 367/384 (95%), Gaps = 7/384 (1%)
Strand = Plus / Plus
Query: 289 cgtatcttcttctgtattaccagtagaacttgtgctggagggttccatctccattacttg 348
|||||||| ||||||||| |||||||| ||||||||||||||| ||||||| ||||||||
Sbjct: 2836 cgtatctt-ttctgtatt-ccagtaga-cttgtgctggagggt-ccatctc-attacttg 2890
Query: 349 aggtggtagacctttgaaatctctttcgactcttttcagctgcgcaagagcactggaaag 408
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2891 aggtggtagac-tttgaaatctctttcgactcttttcagctgcgctagagcactggatag 2949
Query: 409 ctgtgtatctagagccatttcatcggcactaatgccaccagaagttactgctccctgggt 468
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2950 ctgtgtatctagagccatttcatcggcactaatgccaccagatgttactgctccctgggt 3009
Query: 469 tgtagaagctccgcttgacgctagtgtcacgcctggtactgattccttttcggcaatgaa 528
||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 3010 tgtagaagctccgcttgacgctagtgtcacgtctggtactttttccttttcggtaatgaa 3069
Query: 529 acttgctaggaattgtagtacttcgtctattagataggtatgttggcgtgcccaccgtat 588
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3070 acttgctaggaattgtagtacttcgtct-ttagataggtatgttggcgtgcccaccgtat 3128
Query: 589 gtaccacaacgggcgtgttcaaagtggagtttgctggtcttctagttccccttagcatgg 648
||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 3129 gtacctcaacgggcgtgttcaaagtggagtttgttggtcttctagtcccccttagcatgg 3188
Query: 649 tatacgtggttgttcgttggagtg 672
||||||||||||||||||||||||
Sbjct: 3189 tatacgtggttgttcgttggagtg 3212
Score = 123 bits (62), Expect = 7e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 47 atgcattgattataacggttactgtatgtaacttagcgtatgtatgtatatatatatata 106
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 atgcattgattataacggtcactgtatgtaacttagcgtatgtatgtatatatatatata 2658
Query: 107 tatatatatatata 120
| |||||||||||
Sbjct: 2659 caaatatatatata 2672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,121
Number of Sequences: 1807
Number of extensions: 16121
Number of successful extensions: 4399
Number of sequences better than 1.0e-20: 2
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)