BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB08RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 940 0.0
3x_Contig768 159 1e-38
>3x_Contig1737
Length = 17214
Score = 940 bits (474), Expect = 0.0
Identities = 542/560 (96%), Gaps = 4/560 (0%)
Strand = Plus / Minus
Query: 394 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17212 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 17153
Query: 454 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17152 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 17093
Query: 514 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 17033
Query: 574 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17032 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 16973
Query: 634 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16972 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 16913
Query: 694 atagtatcgcctgcagccagcggatcgggtggtttcacaacgatgatgacgatcttgtgc 753
||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 16912 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 16853
Query: 754 aaagcctagatcttgaattctttatgcctttctatttcacttnncaagcttgatgattcc 813
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 16852 aaagcctagatcttgaattctttatgcc-ttctatttcactt-ccaagcttgatgattcc 16795
Query: 814 tgatcttctactgcagtcaccaga-atggcagaatcgtttgatttctttgtgaaccagac 872
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16794 tgatctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtgaaccagac 16735
Query: 873 tttcaaaatgtttgggttctgccccagactcaatttatacccgtnacccattctttaatt 932
|||||||| |||| | |||||||| |||||||||||||||| |||||||||| ||||
Sbjct: 16734 -ttcaaaattgttggttcctgccccaagctcaatttatacccgtaacccattcttcaatt 16676
Query: 933 tcttaccccgcatggctatg 952
||||||||||||||||||||
Sbjct: 16675 tcttaccccgcatggctatg 16656
>3x_Contig768
Length = 2062
Score = 159 bits (80), Expect = 1e-38
Identities = 93/96 (96%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 43 gctttgaaantgaatcatcattttttttacaataccaataagacaaagggtaaagtggta 102
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 95 gctttgaaa-tgaatcatcatttcttctacaataccaataagacaaagggtaaagtggta 37
Query: 103 aagaccgtgtcctgtattcagccattgattattgcc 138
||||||||||||||||||||||||||||||||||||
Sbjct: 36 aagaccgtgtcctgtattcagccattgattattgcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7738
Number of Sequences: 1807
Number of extensions: 7738
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 2
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)