BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB09FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1598 0.0
3x_Contig38 912 0.0
>3x_Contig1517
Length = 8289
Score = 1598 bits (806), Expect = 0.0
Identities = 849/859 (98%), Gaps = 4/859 (0%)
Strand = Plus / Plus
Query: 89 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4616 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 4675
Query: 149 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4676 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 4735
Query: 209 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 4795
Query: 269 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4796 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 4855
Query: 329 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4856 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 4915
Query: 389 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4916 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 4975
Query: 449 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 5035
Query: 509 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 5095
Query: 569 acccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatctttttctt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 acccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatctttttctt 5155
Query: 629 gttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgtt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 gttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgtt 5215
Query: 689 ncttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttca 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 tcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttca 5275
Query: 749 tactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagaaaaagtt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 tactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagaaaaagtt 5335
Query: 809 tatgattttctatcactgcaagctngtgaaatcatcttgggacctgctcatgtatggcaa 868
||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 5336 tatga-tttctatcactgcaagcttgtg-aatcatctttggacctgctcatgtatggcaa 5393
Query: 869 ttgagctatgttccatactcccccattttctaatgctt-ttttgatactaaacaatcc-t 926
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct: 5394 ttgagctatgttccatactcccccattttctaatgcttctttcgatactaaacaatccat 5453
Query: 927 tactgnatcttatcgcgat 945
|||| |||||||||||||
Sbjct: 5454 cactgaatcttatcgcgat 5472
>3x_Contig38
Length = 925
Score = 912 bits (460), Expect = 0.0
Identities = 485/495 (97%), Gaps = 10/495 (2%)
Strand = Plus / Plus
Query: 89 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 158
Query: 149 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 218
Query: 209 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 278
Query: 269 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 338
Query: 329 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 388
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 gccgttgtttcttatagttatcg----------ggtcaggactccttgacctcttcatct 388
Query: 389 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 448
Query: 449 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 508
Query: 509 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 568
Query: 569 acccgttaagaaagt 583
|||||||||||||||
Sbjct: 569 acccgttaagaaagt 583
Score = 323 bits (163), Expect = 4e-88
Identities = 193/202 (95%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 628 tgttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgt 687
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 tgttagatatctcttgaacgagccttcaatattgcctttaatatgcttttcttcttttgt 677
Query: 688 tncttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttc 747
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttc 737
Query: 748 atactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagaaaaagt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 738 atactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagtctaatt 797
Query: 808 ttatgattttctatcactgcaa 829
|||| ||||||||||||||||
Sbjct: 798 ttat-tttttctatcactgcaa 818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7476
Number of Sequences: 1807
Number of extensions: 7476
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)