BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB09RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1636 1683 0.0
>3x_Contig1636
Length = 15667
Score = 1683 bits (849), Expect = 0.0
Identities = 909/925 (98%), Gaps = 4/925 (0%)
Strand = Plus / Minus
Query: 45 gcttgcaaagaacagaggtgatatctatggtagcgagcttcctcaaattgttgcgatacc 104
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 4160 gcttgcaaagaacagaggtgatagcaatggtagcgagcttcctcaaattgttgcgatacc 4101
Query: 105 cttcatcagaaaatacattcagtatgcaaaagagagaattattcctcaattgactcaaga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4100 cttcatcagaaaatacattcagtatgcaaaagagagaattattcctcaattgactcaaga 4041
Query: 165 agctgtagacgttatcatcaaatcatattcaaatctaagaaacgatcagaacaccattaa 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4040 agctgtagacgttatcatcaaatcatattcaaatctaagaaacgatcagaacaccaagaa 3981
Query: 225 atcccctatcacggcaagaactctagaaactttaatcagattatccagtgctcatgccaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3980 atcccctatcacggcaagaactctagaaactttaatcagattatccagtgctcatgccaa 3921
Query: 285 ggtaaggctttcaaagaaagtagaactagaagatgcaaaggtagcaacacaattactaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3920 ggtaaggctttcaaagaaagtagaactagaagatgcaaaggtagcaacacaattactaag 3861
Query: 345 atttgcattactaggtgaggacggagccaacttcgacgaacaggaatttgccgaaggcag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860 atttgcattactaggtgaggacggagccaacttcgacgaacaggaatttgccgaaggcag 3801
Query: 405 aacaaccgaaaaatctccaagaaagaagccaagagcttctccaaggaagaagagaggggc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 aacaaccgaaaaatctccaagaaagaagccaagagcttctccaaggaagaagagaggggc 3741
Query: 465 cgtttacaaagaagttgactcagaggatgcagaagaggaccaggaaatggcagagactca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 cgtttacaaagaagttgactcagaggatgcagaagaggaccaggaaatggcagagactca 3681
Query: 525 accggatcctgctgacggtctggaatctacgatggtacggttagcaccagaacaagagga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 accggatcctgctgacggtctggaatctacgatggtacggttagcaccagaacaagagga 3621
Query: 585 agaccttcaaagaagactagaacaaaacttgagagtgagtccgagacgccaactatcagt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 agaccttcaaagaagactagaacaaaacttgagagtgagtccgagacgccaactatcagt 3561
Query: 645 cgaaagaagagtactttcacaaagcgaccatcaacaacaggttctccaccactcctcgca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 cgaaagaagagtactttcacaaagcgaccatcaacaacaggttctccaccactcctcgca 3501
Query: 705 atcctcaactggaccccttgaaactggctctcaattggaaccgtctcatatgacccttga 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 atcctcaactggaccccttgaaactggctctcaattggaaccgtctcatatgacccttga 3441
Query: 765 ttntatgtccatcgaagagatggaccagggttcaatctcaaccggtaggttatcgtcact 824
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 ttttatgtccatcgaagagatggaccagggttcaatctcaaccggtaggttatcgtcact 3381
Query: 825 ctcaggtattgttgnncagactcatgc-atcagacattttcgaggaagaatcgtatcctg 883
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3380 ctcaggtattgttgca-agactcatgcaatcagacattttcgaggaagaatcgtatcctg 3322
Query: 884 tcgccgcacttttcgaagaaatttacgagc-agttccagaagaggaaaaa-tcactggtg 941
||||||||||||||||| |||| |||||| ||||||||||||||||||| |||||| ||
Sbjct: 3321 tcgccgcacttttcgaaagaattaacgagcaagttccagaagaggaaaaattcactgttg 3262
Query: 942 atgaatacgtngctggtctaaggat 966
|||||||||| ||||||||||||||
Sbjct: 3261 atgaatacgttgctggtctaaggat 3237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)