BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZB11RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1624 0.0
>3x_Contig1519
Length = 9351
Score = 1624 bits (819), Expect = 0.0
Identities = 874/889 (98%), Gaps = 3/889 (0%)
Strand = Plus / Minus
Query: 43 cttgctgcctgatat-atattttgcttttttacttgcgtcattttcagtcttcattagat 101
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cttgctgcctgatatcatattgggcttttttacttgcgtcattttcagtcttcattagat 2772
Query: 102 ttttcacttctctacgtctttggaccaggttggccaataatcttggcagtacacctcgtg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 ttttcacttctctacgtctttggaccaggttggccaataatcttggcagtacacctcgtg 2712
Query: 162 atttttctcttgaaggcacatctggaagttcttcattatcctgtggattcctgtttacag 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2711 atttttctcttgaaggcacatctggaagttcttcattatcctgtggattcctgtcaacag 2652
Query: 222 tagtgaagcaaatattaaactcttgaatgatagatgggtacaacgaattgaaatccatga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 tagtgaagcaaatattaaactcttgaatgatagatgggtacaacgaattgaaatccatga 2592
Query: 282 ccaagatatagtttttatgcaaacctttttctggttcaaagaccaacccaccctgatatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 ccaagatatagtttttatgcaaacctttttctggttcaaagaccaacccaccctgatatt 2532
Query: 342 ttgattttttactggacacttgtggctccataggatcttcattcttttgttgtctgtctt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 ttgattttttactggacacttgtggctccataggatcttcattcttttgttgtctgtctt 2472
Query: 402 gcttcatttgccttgtttctttatcaggaacaatgtaatcatttctgttaaattcatgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 gcttcatttgccttgtttctttatcaggaacaatgtaatcatttctgttaaattcatgaa 2412
Query: 462 gcaaaatatattcatttctaccagctcttgtaccacccaaagtctgtctccatccattgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 gcaaaatatattcatttctaccagctcttgtaccacccaaagtctgtctccatccattgc 2352
Query: 522 ctgctaaattagtcagttgtttggttaaagagagaatttgaatgcggaatgcaacttctg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 ctgctaaattagtcagttgtttggttaaagagagaatttgaatgcggaatgcaacttctg 2292
Query: 582 ctgttataatggagttttcgatgttttcgcctagcgctagaagcatctgggattcatctt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 ctgttataatggagttttcgatgttttcgcctagcgctagaagcatctgggattcatctt 2232
Query: 642 cctgatatattgggtttaggtaattaatttcgagagattttctttcaataccgcaggaaa 701
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2231 cctgatatattgggtttaggtaattaatttcgagagattgtctttcaataccgcaggaaa 2172
Query: 702 cttgatacatttcgtttagttcc-caattttgacattttggagttagtgactgacccatt 760
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2171 cttgatacatttcgtttagttccgcaattttgacattttggagttagtgactgacccatt 2112
Query: 761 tcattggaaatgtcacataacaacctacctgcaaataaatcccttactatgaactgtgtc 820
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2111 tcattggaaatgtcacataacaacctacctgcaaataaatccctaactatgaactgtgtc 2052
Query: 821 atactattattatgttnttcaaacttgtctggccatgctttccgcagtcttctccc-aag 879
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2051 atactattattatgttttccaaacttgtctggccatgctttccgcagtcttctcccaaag 1992
Query: 880 acactaaatttgagaatatttaactcataagctctgngtgccagaacat 928
|||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1991 acactaaattgaggaatatttaactcataagctctgtgtgccagaacat 1943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7964
Number of Sequences: 1807
Number of extensions: 7964
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)