BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC02FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1382 0.0
>3x_Contig1742
Length = 17167
Score = 1382 bits (697), Expect = 0.0
Identities = 743/752 (98%), Gaps = 5/752 (0%)
Strand = Plus / Plus
Query: 86 ccagaagtcacgtcacctttatccaaagatcaatattccaagttgctagaaaatgatcag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10972 ccagaagtcacgtcacctttatccaaagatcaatattccaagttgctagaaaatgatcag 11031
Query: 146 catttaaacaaattaattaacgaacacgatgagttggtttcggtcaagctttcaaaacta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11032 catttaaacaaattaattaacgaacacgatgagttggtttcggtcaagctttcaaaacta 11091
Query: 206 aatgaagaagatgcagtaatagagaaatacgtcaactggatcggtgaagttaacgagaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11092 aatgaagaagatgcagtaatagagaaatacgtcaactggatcggtgaagttaacgagaga 11151
Query: 266 ttatccccacatttcaatcagcctacaggtcgaaagaagtcgaaaagtgcaagtaaagtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11152 ttatccccacatttcaatcagcctacaggtcgaaagaagtcgaaaagtgcaagtaaagtt 11211
Query: 326 acaatatgcggctaccataatgagttcacgatccctcggtcagttgaggagtttttagat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11212 acaatatgcggctaccataatgagttcacgatccctcggtcagttgaggagtttttagat 11271
Query: 386 aagctacttcagttgaaagaagacgaaaacagtaatatcacatcagttgacggtgtttgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11272 aagctacttcagttgaaagaagacgaaaacagtaatatcacatcagttgacggtgtttgt 11331
Query: 446 gtaaagacaaaatgtgctaagcatcaggattggattacattgtcccaaaacgatctctcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11332 gtaaagacaaaatgtgctaagcatcaggattggattacattgtcccaaaacgatctctcg 11391
Query: 506 gaacagaaggactctctagaaaacgtcaaaagaagactcgatttactaattagcgtcaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11392 gaacagaaggactctctagaaaacgtcaaaagaagactcgatttactaattagcgtcaga 11451
Query: 566 acgaaccaattgagaatctcattcttcgaacaagagatgtccaatcgcgtcctacccggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11452 acgaaccaattgagaatctcattcttcgaacaagagatgtccaatcgcgtcctacccggt 11511
Query: 626 gttaagacctagctcatatctaatgtgtcacttttctgtcattacaatgaaggcgaaacg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11512 gttaagacctagctcatatctaatgtgtcacttttctgtcattacaatgaaggcgaaacg 11571
Query: 686 cttatatttaacttgtagcatcaactagcaagaaaagcatgtataaataatttaacctaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11572 cttatatttaacttgtagcatcaactagcaagaaaagcatgtataaataatttaacctaa 11631
Query: 746 tacaaacatcaggttttttcatatgcttcctagtccaattatttgaacgtattatagcnt 805
||||||||||||| |||||||||||||| ||||||||| || ||||||||| |||| |
Sbjct: 11632 tacaaacatcagg-tttttcatatgctt-ctagtccaa-taattgaacgta-tataagct 11687
Query: 806 ttatcctatcgtaaaccttaattcatctaatc 837
||||||||||||||||| ||||||||||||||
Sbjct: 11688 ttatcctatcgtaaacc-taattcatctaatc 11718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6436
Number of Sequences: 1807
Number of extensions: 6436
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)