BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC02RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1723 0.0
>3x_Contig1762
Length = 22098
Score = 1723 bits (869), Expect = 0.0
Identities = 911/921 (98%), Gaps = 3/921 (0%)
Strand = Plus / Plus
Query: 51 cagacacccaacagaatgaattcgtcatctttatcaaaaagaagcatgtcaacaaatgtg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7356 cagacacccaacagaatgaattcgtcatctttatcaaaaagaagcatgtcaacaaatgtg 7415
Query: 111 gagagaatcatggaaatgacgcctacgatgaatgcacctgatcagtcaatatcaagtgac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7416 gagagaatcatggaaatgacgcctacgatgaatgcacctgatcagtcaatatcaagtgac 7475
Query: 171 atttccaaagatgtttacctaacaaaaattactgcagtgaaagtaccttcattatcgtcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7476 atttccaaagatgtttacctaacaaaaattactgcagtgaaagtaccttcattatcgtcc 7535
Query: 231 aagggaaaagtagtatcaaccaagatgggtgataagcaagctattggaatattagataac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7536 aagggaaaagtagtatcaaccaagatgggtgataagcaagctattggaatattagataac 7595
Query: 291 gtgaatggttggggcaagatatggatcttcaacttgaacaattctgtcatgacgaatgtc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7596 gtgaatggttggggcaagatatggatcttcaacttgaacaattctgtcatgacgaatgtc 7655
Query: 351 aggttcaaagcatttggatactctccaatttcaatgacgaaaaccatggatataaaacct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7656 aggttcaaagcatttggatactctccaatttcaatgacgaaaaccatggatataaaacct 7715
Query: 411 gggattgtgcgagacgtttgtgtatataattcggaagatctcatcggttacttcgccttt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7716 gggattgtgcgagacgtttgtgtatataattcggaagatctcatcggttacttcgccttt 7775
Query: 471 ttgcagaaggatacactaatattgtacaacccatatctggagattacatcccccgagttc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7776 ttgcagaaggatacactaatattgtacaacccatatctggagattacatcccccgagttc 7835
Query: 531 caactccatgtctcgagtcctgatgattgttactatatttcagattcttatatgataata 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7836 caactccatgtctcgagtcctgatgattgttactatatttcagattcttatatgataata 7895
Query: 591 agcagcagcaattcttgggaaattgttccttctcctcatacgtatccgactggaaatgcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7896 agcagcagcaattcttgggaaattgttccttctcctcatacgtatccgactggaaatgcc 7955
Query: 651 ttgaaatcaatatttattggtatcaaatacgtactacacgaaacttttcatttattttta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7956 ttgaaatcaatatttattggtatcaaatacgtactacacgaaacttttcatttattttta 8015
Query: 711 gctatatggcaagcacaaagatcagagctggaaaaatctaacacctctccgctacatgtt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8016 gctatatggcaagcacaaagatcagagctggaaaaatctaacacctctccgctacatgtt 8075
Query: 771 gcagactctgatcaggatttcattgcattacaaaacactatccttcntaaaccttgataa 830
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8076 gcagactctgatcaggatttcattgcattacaaaacactatccttc-taaaccttgataa 8134
Query: 831 ttgtaatgacacattcgctcatcccttgtataaagaagatccttcatgccttgccaaagt 890
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8135 ttgtaatgacacattcgctcatcccttgtataaagaagatccttcatggcttgccaaagt 8194
Query: 891 tactattgtgtctacacctaatgcgggaagaattttcacctaatatttattgagcttgag 950
||||| ||||||||||||||||||||||||| ||| || |||||||| |||||||||
Sbjct: 8195 tacta-tgtgtctacacctaatgcgggaagagtttcaactaaatattta-tgagcttgaa 8252
Query: 951 attgtaaacaagcttgctcgg 971
|||||||||||||||||||||
Sbjct: 8253 attgtaaacaagcttgctcgg 8273
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7513
Number of Sequences: 1807
Number of extensions: 7513
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)