BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC03FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1602 0.0
>3x_Contig1594
Length = 9813
Score = 1602 bits (808), Expect = 0.0
Identities = 859/870 (98%), Gaps = 5/870 (0%)
Strand = Plus / Plus
Query: 85 ccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatgtgat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 ccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatgtgat 5262
Query: 145 ttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatattaccat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 ttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatattaccat 5322
Query: 205 caagaatgactcataacaaacaattgcctttaaggtgaagaccacagctcctaaggtata 264
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 caagaatgactcagaacaaacaattgcctttaaggtgaagaccacagctcctaaggtata 5382
Query: 265 ctgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaagtgat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 ctgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaagtgat 5442
Query: 325 tcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattcttggt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 tcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattcttggt 5502
Query: 385 tatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggcctca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 tatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggcctca 5562
Query: 445 attggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatcaact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 attggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatcaact 5622
Query: 505 agatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgagactgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5623 agatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgagactgt 5682
Query: 565 cattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccgctag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 cattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccgctag 5742
Query: 625 tgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggatactga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 tgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggatactga 5802
Query: 685 aaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgataccag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5803 aaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgataccag 5862
Query: 745 cgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccgtggt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5863 cgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccgtggt 5922
Query: 805 catttggatcgttataggtttcttactttggtattggttatcttaggatacattctgnat 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5923 catttggatcgttataggtttcttactttggtattggttatcttaggatacattctgatt 5982
Query: 865 nagtgagggaactatcaaccatcgtattatatattgac-acatattttctcgactttgat 923
|||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||
Sbjct: 5983 aagtgagggaactatcaaccatcgtataatata-tgacaacata-tttctcgactttgat 6040
Query: 924 aggaaatgttggtatgaaattatattcgta 953
| ||||||||| |||| |||||||||||||
Sbjct: 6041 a-gaaatgttgttatg-aattatattcgta 6068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6309
Number of Sequences: 1807
Number of extensions: 6309
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)