BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC03RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1147 1582 0.0
>3x_Contig1147
Length = 6505
Score = 1582 bits (798), Expect = 0.0
Identities = 899/920 (97%), Gaps = 10/920 (1%)
Strand = Plus / Minus
Query: 35 aaacacgcttgcagcacaaactgctgtctt-atcgatgactt-atacactttcgtct-at 91
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 1017 aaacaagcttgcagcacaaactgctgtctcgatcgatgacttcatacactttcgtctcat 958
Query: 92 aatatagatataacttctccttttcatcttttaaatgtacataaatatattatatatacc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 aatatagatataacttctccttttcatcttttaaatgtacataaatatattatatatacc 898
Query: 152 tcgatcttcaaagtttattcttctcagcttcctctagtttgacagtattcgtcttctg-g 210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 897 tcgatcttcaaagtttattcttctcagcttcctctagtttgacagtattcgtcttctgtg 838
Query: 211 atacttcttagtatattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctcc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 atacttcttagtatattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctcc 778
Query: 271 ttgctgattaaacgttttatgtgataaaatacaggtccaattaagtggagccaatagtag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttgctgattaaacgttttatgtgataaaatacaggtccaattaagtggagccaatagtag 718
Query: 331 atgaaactcaaaaggaagtatttgtactattttgagtgatacttaaaattgctacgctac 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atgaaactcaaaaggaagtatttgtactattttgagtgatacttaaaattgctacgctac 658
Query: 391 aatggacccacagcaaccggcatccgataattctgaatggcagtttcaggtcagtcctgg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatggacccacagcaaccggcatccgataattctgaatggcagtttcaggtcagtcctgg 598
Query: 451 cgctgcttggaatttaagagcacaagccaggaggggccagacaggcagcagggatgcaat 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cgctgcttggaatttaagagcacaagccaggaggggccagacaggcagcagggatgcaat 538
Query: 511 tccgttaagagtggatgagctgacggatgagaatgagcttaattgggaggctcttaataa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tccgttaagagtggatgagctgacggatgagaatgagcttaattgggaggctcttaataa 478
Query: 571 taggaatcttagcattcttggaaacgataccctttctgatattttcagatcaaatcaact 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taggaatcttagcattcttggaaacgataccctttctgatattttcagatcaaatcaact 418
Query: 631 gatcaataacggaactaacgataataatagtaataacaatatcgacggtgaaatactgaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatcaataacggaactaacgataataatagtaataacaatatcgacggtgaaatactgaa 358
Query: 691 tactacaggaactgacgaagataacagaagaagtactgatatagataataataccgctga 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tactacaggaactgacgaagataacagaagaagtactgatatagataataataccgctga 298
Query: 751 ccatttcgaagaattgacgcggngagctgctcgtgaagctaactnatcgagggaaagtgc 810
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 297 ccatttcgaagaattgacgcggggagctgctcgtgaagctaacttatcgagggaaagtgc 238
Query: 811 tcatgtatcttctggtctgcctgctgactggtttactaccatgnaatcctagt-aactgt 869
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 237 tcatgtatcttctggtctgcctgctgactggtttactaccatg-aatcctagtaaactgt 179
Query: 870 cttttacaccaaagaacattttttggctagnagaagcgaaattccgcccttatgggcatt 929
| ||||||||||||| || ||||||||||| || |||| || |||||||||| ||||||
Sbjct: 178 c-tttacaccaaagacca-tttttggctag-ag-agcggaaatccgcccttagtggcatt 123
Query: 930 gcacaaatttgagatgattt 949
||||||||| |||||||||
Sbjct: 122 gcacaaattgaagatgattt 103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6797
Number of Sequences: 1807
Number of extensions: 6797
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)