BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC04FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1119 1281 0.0
>3x_Contig1119
Length = 5045
Score = 1281 bits (646), Expect = 0.0
Identities = 745/770 (96%), Gaps = 6/770 (0%)
Strand = Plus / Minus
Query: 85 cactgaagaagacaaatactcagtcaagagtcctaagttaccttgatttgataataactc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4359 cactgaagaagacaaatactcagtcaagagtcctaagttaccttgatttgataataactc 4300
Query: 145 taggtgttcacattgcgaccaaagcataccaatcgaaatgagtctttctttcaaaaattt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299 taggtgttcacattgcgaccaaagcataccaatcgaaatgagtctttctttcaaaaattt 4240
Query: 205 ggcaagtttctcattctcggcaataattggatctttaaagtcttttgcatctgagttaac 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4239 ggcaagtttctcatcctcggcaataattggatctttaaagtcttttgcatctgagttaac 4180
Query: 265 tatttcaactagttcatctgataatttgtgaatgctctgaactaaagaaacaatatcatt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4179 tatttcaactagttcatctgataatttgtgaatgctctgaactaaagaaacaatatcatt 4120
Query: 325 atccaatttgttgataaagtagtctgcgaagtgtgagtcatgaaataacggcaccaatga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4119 atccaatttgttgataaagtagtctgcgaagtgtgagtcatgaaataacggcaccaatga 4060
Query: 385 aagtaaatagaatacaacattcatcaactctaccatttgcgtcttgaaagcatcttcatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4059 aagtaaatagaatacaacattcatcaactctaccatttgcgtcttgaaagcatcttcatt 4000
Query: 445 atttgaaatcttatctggagttgagataatccctaatttggttgcattggacttgattag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3999 atttgaaatcttatctggagttgagataatccctaatttggttgcattggacttgattag 3940
Query: 505 ctttgaaagtttgcccagttcttccagtaaagacgaagcatgtaatttggtcttcttagg 564
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3939 ctttgaaagtttgcccagttcttccagtaaagacgaagcaggtaatttggtcttcttagg 3880
Query: 565 tattccatgcaacgattccacagaagtatatgggaattctgttttcaaacgtcttatatc 624
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3879 tattccatgcaacgattccacagaagtatatgggaattctgttttcaaacgttttatatc 3820
Query: 625 gtcagattgtgttgatgacattgcgttgagctttttaata-tgattgaaagacgtccgct 683
||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct: 3819 gtcagatagtgttgatgacattgcgttgagctttttaatattgatgaaatgacgtccgct 3760
Query: 684 ggtttagtttggacattgaatgcaatattcacaactttcgagatcctttgtttttacgcc 743
| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 3759 tggttagtttggacattgaatgcaatatctacaactttcgatgagctttgtttttacgcc 3700
Query: 744 agaattatctatcaaatattcaaatttcagtatgtaatttccaaatggaacggcccacat 803
||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct: 3699 agatttatctatcaaatattcaaa-ttcagtatgtaattt-caaatggaacggccaacat 3642
Query: 804 ataccttatttgatgtatagcacattactataatccgccttttgccacat 853
| || ||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 3641 aaacatta-ttgatgtatagca-attactataatccg-cttttgccacat 3595
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7999
Number of Sequences: 1807
Number of extensions: 7999
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)