BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC05FM1.SCF screened BAC_end
(1198 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1329 523 e-148
>3x_Contig1329
Length = 7405
Score = 523 bits (264), Expect = e-148
Identities = 330/351 (94%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 100 aaagaccccattatagattcgacttgggttcagttcatttgtcttatcgttactgatttg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6432 aaagaccccattatagattcgacttgggttcagttcatttgtcttatcgttactgatttg 6373
Query: 160 gtaaaactcatgctttttgtaccattctggacatgttttgttcccacccattaaagacat 219
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372 gtaaaactcatgctcgcggaaccattctggacatgttttgttcccacccattaaagacat 6313
Query: 220 ttttatcntttctagcttgctgtatgacatatatttgataaactgtttagcaccaatctt 279
| | | | | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6312 tgtaagcttcactagcttgctgtatgacatatatttgataaactgttcagcaccaatctt 6253
Query: 280 ggcgacctctggttatcttaaaataagaggattttttatccagtgagtctgtaacctttg 339
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6252 ggcgacctctggttctcttaaaataagaggattttttatccagtgagtctgcaacctttg 6193
Query: 340 caaaacatgatgaattttttggtcatgaatcttcaatctaagtgagctgatttcaccatt 399
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 6192 caaaacatgatgaattttttggtcaagaatcttcaatcgaagtgagctgatttcaccatt 6133
Query: 400 gattttttgcttgccagcagcttccaacaagttagtaacttttcttattag 450
|||||||||||| |||||||||| ||||| |||||||| |||||||||||
Sbjct: 6132 tattttttgcttgtcagcagcttctaacaatttagtaac-tttcttattag 6083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7401
Number of Sequences: 1807
Number of extensions: 7401
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1198
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1182
effective length of database: 10,329,639
effective search space: 12209633298
effective search space used: 12209633298
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)