BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC06FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 706 0.0
>3x_Contig1768
Length = 25668
Score = 706 bits (356), Expect = 0.0
Identities = 463/499 (92%)
Strand = Plus / Plus
Query: 101 agattcgaatactaaccgagtaagacttattgataatattttagaggatgaagatgctaa 160
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24693 agattcgaatactaaccgagtaagacttattgataatatttcagaggatgaagatgctaa 24752
Query: 161 cgacagtagctcagatttttcattatcttatgaggaagctccggttgattcagagatatt 220
||||||||||||||| | ||||| | |||||||||||||||||||||||||||||
Sbjct: 24753 cgacagtagctcagagaaaacgatatctcaagaggaagctccggttgattcagagatatt 24812
Query: 221 ttacataatttagggnagaaagaaaatttaagccattgattactctaaagttttaaactt 280
| || || |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24813 attcaaaaagaagggtagaaagaaaataaaagccattgattactctaaagttttaaactt 24872
Query: 281 aataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatgtcagagaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24873 aataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatgtcagagaa 24932
Query: 341 agatgtgatggaacttcgattatcattagataacattaaaatctcagggaaagattgtcc 400
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24933 agatgtggaggaacttcgattatcattagataacattaaaatctcagggaaagattgtcc 24992
Query: 401 caaacctgtaacgaaatgggcacagcttggtttgtcctctgaaatcatggatcttatctt 460
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24993 caaacctgtaacgaaatggtcacagcttggtttgtcctctgaaatcatggatcttatctc 25052
Query: 461 caaccaacttcagtttgtaaccctcacaccaattcaatgcctggctataccggctattat 520
|||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 25053 caacgaactacagtttgtaaccctcacaccaattcaatgccaggcaataccggctattat 25112
Query: 521 gtcaggcacagcagttattggtatcttaaaaactgtgtttgggaaaacggtcgcttttct 580
|||||||| || ||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 25113 gtcaggcagagatgttattggtatctcaaaaactgggtcagggaaaacggtcgcttttct 25172
Query: 581 cctaccatttgtttgacag 599
||||||| ||||| |||||
Sbjct: 25173 cctaccacttgttagacag 25191
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6669
Number of Sequences: 1807
Number of extensions: 6669
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)