BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC09FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1562 0.0
>3x_Contig1781
Length = 20717
Score = 1562 bits (788), Expect = 0.0
Identities = 832/845 (98%), Gaps = 2/845 (0%)
Strand = Plus / Minus
Query: 88 ctgagagagccttactggtcttagtgttcttttcgatcttgataaacagatgtgatttta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622 ctgagagagccttactggtcttagtgttcttttcgatcttgataaacagatgtgatttta 16563
Query: 148 aaatcgtagccgttgagtttggtgtcaataagttagtttgggtaccatcagctatgatgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16562 aaatcgtagccgttgagtttggtgtcaataagttagtttgggtaccatcagctatgatgg 16503
Query: 208 caggtccttgtattttagtgccgatctccaaatcatccaatttgtacataggagtctcaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16502 caggtccttgtattttagtgccgatctccaaatcatccaatttgtacataggagtctcaa 16443
Query: 268 cccacccttcaccgaacataacaggtttcctgaataaaggttcaggagcagcctttgcta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16442 cccacccttcaccgaacataacaggtttcctgaataaaggttcaggagcagcctttgcta 16383
Query: 328 ccaatctctgtagttgagaatcaatgtactcttcttctcttacgttggatacaccagtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16382 ccaatctctgtagttgagaatcaatgtactcttcttctcttacgttggatacaccagtgg 16323
Query: 388 cccttactcgcacatcatccactatgatcgatttatcctcaaacttgaatccaaactcct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16322 cccttactcgcacatcatccactatgatcgatttatcctcaaacttgaatccaaactcct 16263
Query: 448 ttttatgtagttcatggaattggtttgtgtagcttgtatctcccgattctaagaccatta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16262 ttttatgtagttcatggaattggtttgtgtagcttgtatctcccgattctaagaccatta 16203
Query: 508 aagcggtttctgtaccctcatatctcaagttcaaatatttctccaatctgatagtctcag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16202 aagcggtttctgtaccctcatatctcaagttcaaatatttctccaatctgatagtctcag 16143
Query: 568 tgttgaagccttgttgctntagcgtgtcaatacatttggatgtgagcctattgaatttat 627
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16142 tgttgaagccttgttgctttagcgtgtcaatacatttggatgtgagcctattgaatttat 16083
Query: 628 cctcaatcaacgcatttgtttcgcgattactttcatctagcacgtaagaacaaggctctc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082 cctcaatcaacgcatttgtttcgcgattactttcatctagcacgtaagaacaaggctctc 16023
Query: 688 tagactcttcaaccacatccgcaaggaacatgccatacgcagaaagaatggaagaattac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16022 tagactcttcaaccacatccgcaaggaacatgccatacgcagaaagaatggaagaataac 15963
Query: 748 gatgaatcaaaactgtatcaattcctaatgtttcagcgatggatacggcatgttgaccac 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15962 gatgaatcaaaactgtatcaattcctaatgtttcagcgatggatacggcatgttgaccac 15903
Query: 808 cagccccaccaaaggaaataagacgatgctgcgaaat-acatgttctttagnctcgttc- 865
||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||
Sbjct: 15902 cagccccaccaaaggaaataagacgatgctgcgaaatcacatgtcctttagcctcggtca 15843
Query: 866 aagtacggattggnctagccattgactcgttcggcactttttagaaaccataggcacctt 925
||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||| |||
Sbjct: 15842 aagtacggattggcctagccattgactcgttcgcaacttttaagaacccataggcaactt 15783
Query: 926 catca 930
|||||
Sbjct: 15782 catca 15778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5614
Number of Sequences: 1807
Number of extensions: 5614
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)