BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC09RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1610 0.0
3x_Contig1408 107 4e-23
>3x_Contig1807
Length = 66587
Score = 1610 bits (812), Expect = 0.0
Identities = 897/919 (97%), Gaps = 6/919 (0%)
Strand = Plus / Plus
Query: 42 gcttagtgttaccacttatctgttatatcactaccttttagtaattagtatgacgatcaa 101
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3711 gcttagtgttaccacttatctgcaatatcactaccttttagtaattagtatgacgatcaa 3770
Query: 102 acaatcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3771 acaatcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaag 3830
Query: 162 ttgtagtatggagtttgtcgaagatattttaaaatactcgagttagcgtattttttttca 221
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3831 ttgtagtatggagtttgtcgaagatattttaaaatactcgagttagcgtatcttttctca 3890
Query: 222 tcttaatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3891 tcttaatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtata 3950
Query: 282 atccaaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctctt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3951 atccaaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctctt 4010
Query: 342 ctttacaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4011 ctttacaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgatt 4070
Query: 402 cttggatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4071 cttggatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgtt 4130
Query: 462 ccagtacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4131 ccagtacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaa 4190
Query: 522 gttggctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 gttggctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatct 4250
Query: 582 caaatcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4251 caaatcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttc 4310
Query: 642 agaagaactaccaggcctcaagattttatacctttcctttagaatgttctccaccttgtc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4311 agaagaactaccaggcctcaagattttatacctttcctttagaatgttctccaccttgtc 4370
Query: 702 taagttcttgaacaaagtcagcactggcatatggatggaaagagatggagatttttgcca 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4371 taagttcttgaacaaagtcagcactggcatatggatggaaagagatggagatttttgcca 4430
Query: 762 tatgacgagtcanacaaacccagcgaaaaggggtcattcaccccttcggccggattaaaa 821
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4431 tatgacgagtcaaacaaacccagcgaaaaggggtcattcaccccttcggccggatt-aaa 4489
Query: 822 gcct-atgatgagctttctagtggcagagttgaaaacagatctgtcatgcaggtaccgat 880
|||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 4490 gcctaatgatgagcttcctagtgcaggagttgaaaacagatctgtcaggcaggtaccgat 4549
Query: 881 ggtaccgtttgatcacaattaccacttncnaagtattganacnattcttttcaaaagtga 940
||||||| ||||||||||||||||||| ||| ||||| || |||| ||||||||||||
Sbjct: 4550 ggtaccg-ttgatcacaattaccacttcgaaag-attgagacaattc-tttcaaaagtga 4606
Query: 941 ggccagactaccgaggcag 959
||||||||||| ||||||
Sbjct: 4607 -gccagactacccaggcag 4624
>3x_Contig1408
Length = 6607
Score = 107 bits (54), Expect = 4e-23
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 459 gttccagtacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgtt 518
|||||| || ||||||||||||||||||||||||||||| ||||| || | ||||||
Sbjct: 2369 gttccaatataagtttctgagccacaaatggatgtaagggtaccccgagcgaatagtgtt 2428
Query: 519 caagttggctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataa 578
||| |||| |||||| |||||| |||||||||| || ||||| | ||||||| |||||
Sbjct: 2429 caaattggttttgaaatgctgaacgtatacagggtcaaatcttacaatggtaggatataa 2488
Query: 579 tctcaaatcggcttcagtcaattgatctcc 608
|||||| || || ||||| |||||||||||
Sbjct: 2489 tctcaagtcagcctcagttaattgatctcc 2518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6972
Number of Sequences: 1807
Number of extensions: 6972
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)