BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC10FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 1225 0.0
>3x_Contig1126
Length = 5421
Score = 1225 bits (618), Expect = 0.0
Identities = 775/822 (94%), Gaps = 4/822 (0%)
Strand = Plus / Minus
Query: 101 tggagaaaccttgttgtctctgttgaatcttggtctttgtggaggagctctgattcttct 160
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2551 tggagaaaaattgttgtctctgttgaatcttggtatttgtggaggagctctgattcttct 2492
Query: 161 gtcagttctggatctgactctaacaattctagcgtggatagcgcaagaaatacattattg 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 2491 gtcagttctggatctgactctaacaattctagcgtggatagcgcaagaaatacagtagtg 2432
Query: 221 caacttgttgtaggtctttggaagagcatattcagcgtagacagaggcttcagacaaatc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 caacttgttgtaggtctttggaagagcatattcagcgtagacagaggcttcagacaaatc 2372
Query: 281 tctgatagcagcagcttcaacgatgtttctgatagccattctcttgatggccttgtcctt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 tctgatagcagcagcttcaacgatgtttctgatagccattctcttgatggccttgtcctt 2312
Query: 341 tggaacagatctggaacagttgacacatctgacaggcttgacgtgacctctacccttctt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 tggaacagatctggaacagttgacacatctgacaggcttgacgtgacctctacccttctt 2252
Query: 401 gtttctaccgttggaagctctcttctttggcattctgtaaaagtttattcaatgtataat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 gtttctaccgttggaagctctcttctttggcattctgtaaaagtttattcaatgtataat 2192
Query: 461 aatctggtacaacgacaacagtgtgcgtttacaaattattatcataacaatttatgttag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 aatctggtacaacgacaacagtgtgcgtttacaaattattatcataacaatttatgttag 2132
Query: 521 taaattaatattcgaataataatcctcgtatgtgagagtgataagttaagttgtattgtc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 taaattaatattcgaataataatcctcgtatgtgagagtgataagttaagttgtattgtc 2072
Query: 581 taaatctttccatttctttataatcgtggaaaatcagaccatcctcatatgctaacatgg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 taaatctttccatttctttataatcgtggaaaatcagaccatcctcatatgctaacatgg 2012
Query: 641 actgtatgatggtccgattctaaagctcatgggccggtatttatctcacttt-ccttcca 699
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 2011 actgtaggatggtccgatactaaagctcatgggccgttatttatctcactttcccttcca 1952
Query: 700 ttgtctacgttgaattatcatctctttgatattcatactggctccccaaaaatattggcc 759
||||||| ||||||||||||||| ||||||||||||||||||||| | || ||||| |
Sbjct: 1951 ttgtctaggttgaattatcatctttttgatattcatactggctccgaagaagtattgtct 1892
Query: 760 gcaaa-ttaattagcctttctttcccctgcatgttgcttcgctctctggaatagacactc 818
| ||| ||||||||||| ||| |||||| ||||| ||||||||||||| |||||| ||
Sbjct: 1891 gtaaatttaattagcctctctctcccctccatgtcgcttcgctctctgtaatagatcatc 1832
Query: 819 cgatttccattcaggataaacaattatttttggtccctcggctttaggtttctggtgggt 878
||||||||||||||| | |||||| || ||| |||| | |||||||||| || |||
Sbjct: 1831 ggatttccattcaggagatacaattcattctgggtcctcaggcttaggtttct-gttggt 1773
Query: 879 tccctatt-attgcagatctatcctaatcttattggatcttt 919
| |||||| |||||| |||||||| |||| ||| |||||||
Sbjct: 1772 ttcctattaattgcaattctatccttatctcatttgatcttt 1731
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6618
Number of Sequences: 1807
Number of extensions: 6618
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)