BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC11FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1299 1509 0.0
>3x_Contig1299
Length = 7525
Score = 1509 bits (761), Expect = 0.0
Identities = 846/869 (97%), Gaps = 4/869 (0%)
Strand = Plus / Plus
Query: 89 tcaacattgaaaaattcccagctgaacctttaacgactttgaatgataagatcttttgga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tcaacattgaaaaattcccagctgaacctttaacgactttgaatgataagatcttttgga 1007
Query: 149 ttataaaatatgagaaataaaggtttgtaaagggccattgagagctcaagaaggtgttga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ttataaaatatgagaaataaaggtttgtaaagggccattgagagctcaagaaggtgttga 1067
Query: 209 ggcgcgatgttttttttaacgatattcaagaaacagaagttgaacccatcagatggtaaa 268
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 ggcgcgatgtctagtggaacgatattcaagaaacagaagttgaacccatcagatggtaaa 1127
Query: 269 ggtcaagcaaaaccatgggttgaaaagtatagaccaaggaaattagatgatgttgctgct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 ggtcaagcaaaaccatgggttgaaaagtatagaccaaggaaattagatgatgttgctgct 1187
Query: 329 caggatcatgccgttaccgtcttgaaaaggactttacagactgcaaatttgccacatatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 caggatcatgccgttaccgtcttgaaaaggactttacagactgcaaatttgccacatatg 1247
Query: 389 ttgttttatggtcctcctggtactggtaagacttctactattcttgctttgacgaaagag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 ttgttttatggtcctcctggtactggtaagacttctactattcttgctttgacgaaagag 1307
Query: 449 ttgtacggtccccatttatcgaacagcagagttctagaattaaacgcgtccgatgaacgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 ttgtacggtccccatttatcgaacagcagagttctagaattaaacgcgtccgatgaacgt 1367
Query: 509 ggtatttcgatcgtcagagagaaagtgaagaactttgctaggctcactgtgtctaagcca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 ggtatttcgatcgtcagagagaaagtgaagaactttgctaggctcactgtgtctaagcca 1427
Query: 569 tcagaatcagaccttgcgaattatccatgtccaccatacaaaattatcattcttgatgaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 tcagaatcagaccttgcgaattatccatgtccaccatacaaaattatcattcttgatgaa 1487
Query: 629 gccgattctatgactgctgacgcacaaagtgcgct-gcgtagaaccatggaaacctattc 687
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1488 gccgattctatgactgctgacgcacaaagtacgctcgcgtagaaccatggaaacctattc 1547
Query: 688 tggtgtcactagattctgtttgatctgtaattacgttactagaatcattgatcccttggc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 tggtgtcactagattctgtttgatctgtaattacgttactagaatcattgatcccttggc 1607
Query: 748 ttcaaggtgttccaaattcagattcaaagcgttggattcatccaatgcactaagccgtct 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 ttcaaggtgttccaaattcagattcaaagcgttggattcatccaatgcactaagccgtct 1667
Query: 808 acagttcatcgctaacgaagaatcttttgaatatgaagacggtgttcttgtaaagatatt 867
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct: 1668 acagttcatcgctaacgaagaatctttgaaatatgaagacggtgttcttgaaagaatatt 1727
Query: 868 agatttttcccaagttgatctaaagaaagctattactcttgct-caatctgcagctaaaa 926
|||| ||||||||| |||||||| || ||||| |||| |||| |||||||||||||| |
Sbjct: 1728 agatatttcccaaggtgatctaagaaaggctataactc-tgctccaatctgcagctaaga 1786
Query: 927 tcg-gttgcagaacgatgatgcggatact 954
||| ||||||||||||||||||| |||||
Sbjct: 1787 tcgtgttgcagaacgatgatgcgaatact 1815
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7272
Number of Sequences: 1807
Number of extensions: 7272
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)