BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC11RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1687 0.0
>3x_Contig1800
Length = 38778
Score = 1687 bits (851), Expect = 0.0
Identities = 893/906 (98%), Gaps = 1/906 (0%)
Strand = Plus / Plus
Query: 48 ctttatgcaacttaccatctgcattactaacatcttcgaattcaataccgtgatttgccc 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6603 ctttatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgccc 6662
Query: 108 attcccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6663 attcccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctt 6722
Query: 168 tcaaagatccaggaccgttacccattgcatggccgtactcacacaagatcataggttttt 227
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 6723 tcaaagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggctttt 6782
Query: 228 caaacttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6783 caaacttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttg 6842
Query: 288 ggtacatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6843 ggtacatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaa 6902
Query: 348 gtctggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6903 gtctggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataac 6962
Query: 408 aagcttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6963 aagcttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaa 7022
Query: 468 gttgggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatggg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7023 gttgggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatggg 7082
Query: 528 cattaacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7083 cattaacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgac 7142
Query: 588 gattaaatggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7143 gattaaatggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagc 7202
Query: 648 ccagcttatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7203 ccagcttatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacag 7262
Query: 708 cattgatgttaaacttcttcattagaatcaagtccctaacaacaaaatctaatggcacag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7263 cattgatgttaaacttcttcattagaatcaagtccctaacaacaaaatctaatggcacag 7322
Query: 768 ctctaccgaaccttggatggtgatcatgtctgttgacacctctaaagagaatgtctttgc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7323 ctctaccgaaccttggatggtgatcatgtctgttgacacctctaaagagaatgtctttgc 7382
Query: 828 cattaacagtaatgttaccgtcccttcactccacttgtctgaaacc-acatgttgcttta 886
||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||| |
Sbjct: 7383 cattaacagtaatgttaccgtccttcaactccacttgtctgaaaccaacatggtgcttaa 7442
Query: 887 tagattgaatcacactgccatcagattcaattaaatnccactggtacttgtacaaagtag 946
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 7443 tagattgaatcacactgccatcagatccaattaaatccaactggtacttgtacaaagtag 7502
Query: 947 gatttt 952
||||||
Sbjct: 7503 gatttt 7508
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6435
Number of Sequences: 1807
Number of extensions: 6435
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)