BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC12FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1287 0.0
>3x_Contig826
Length = 2477
Score = 1287 bits (649), Expect = 0.0
Identities = 790/833 (94%), Gaps = 3/833 (0%)
Strand = Plus / Plus
Query: 88 atttgttcgggcaatatttttgttttcatcgaggaaaaatccggtattaaacgatggact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 atttgttcgggcaatatttttgttttcatcgaggaaaaatccggtattaaacgatggact 995
Query: 148 gacgggatcccctggtctccgtctttggttgttggtaagtttttggtgtataaagagttg 207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 996 gacgggatcccctggtctccgtcaagggttgttggtaagtttttggtgtataaagagttg 1055
Query: 208 ttcagatctgaaatcggtggtggtggcggtagtgcgaagcagcagtcacgtgattctacg 267
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttcagatcgaatagcggtggtggtggcggtagtgcgaagcagcagtcacgtgattctacg 1115
Query: 268 aattattccaatacaggtagtaccggcgatgcctgcatcgccggtactgcgacatacagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 aattattccaatacaggtagtaccggcgatgcctgcatcgccggtactgcgacatacagt 1175
Query: 328 tacagatcggatgggttgatcaagaaagccttttcgcttcgagttaaatcgaacgtggat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 tacagatcggatgggttgatcaagaaagccttttcgcttcgagttaaatcgaacgtggat 1235
Query: 388 gagctagatccgacgcaggatcctcgtgatcgacatcttttcactatccatatcatctcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 gagctagatccgacgcaggatcctcgtgatcgacatcttttcactatccatatcatctcg 1295
Query: 448 tactatacgctggatgatatcacgaacggagttctcgtcacaccaagtgaaatggtacga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 tactatacgctggatgatatcacgaacggagttctcgtcacaccaagtgaaatggtacga 1355
Query: 508 ttccagaaagtggttccgtcgcaacggttgttggatgcgttggaacatacgagtatcggg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 ttccagaaagtggttccgtcgcaacggttgttggatgcgttggaacatacgagtatcggg 1415
Query: 568 aacttcaagactatcggatcggtgaaatcgaaaaagaagaagaaaccgtaccatcaacac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 aacttcaagactatcggatcggtgaaatcgaaaaagaagaagaaaccgtaccatcaacac 1475
Query: 628 cagcagcatgaatatgaggtttaagttccggggctagccgctcctagcatttcttctttc 687
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1476 cagcagcatgaatatgaggttcaagttccggggctagccgctcctagcattccttctttc 1535
Query: 688 -agcagatgccttagcacatgccttagcaggtaccttcgcatatgtttgaacctccgcaa 746
||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 1536 aagcagatgcctcagcacatgcctcagcaggtaccttcgcagatgtttgtacctccgcaa 1595
Query: 747 aggatttttcatccgtttattttcccaccgtcttcacctgtcccttcaggccattcacca 806
|||||| | || |||| || ||||||||| || |||||| |||| ||||||| ||||||
Sbjct: 1596 aggattatccaaccgtcgatattcccaccgcctccacctggccctccaggccagtcacca 1655
Query: 807 gcgttcccttcttactaccaac-aatgttttagtaggggacacaagtttaactgttcgca 865
||||||||| |||||||||||| ||||| | || |||| ||||||| | ||||| ||||
Sbjct: 1656 gcgttccctccttactaccaacaaatgtatcagcagggaacacaagctcaactg-ccgca 1714
Query: 866 tttcccttactactatttttccgtatattatcaggaaatgtacctgaaagttt 918
| ||||||| ||||| |||||||||| | ||||||||||||| ||||||||
Sbjct: 1715 gtacccttacaactatacttccgtatatcaccaggaaatgtacccgaaagttt 1767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6465
Number of Sequences: 1807
Number of extensions: 6465
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)