BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZC12RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1106 1528 0.0
>3x_Contig1106
Length = 5510
Score = 1528 bits (771), Expect = 0.0
Identities = 881/914 (96%), Gaps = 3/914 (0%)
Strand = Plus / Plus
Query: 51 cattcattctaatttcaaattcaatccataaaagcaaggctttctgttagtattctcgaa 110
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 cattcattctaaacacaaattcaatccataaaagcaaggctttctgttagtattctcgaa 2684
Query: 111 aactctcgaccacttaaaagcgtacacatacgttcattatgttatttgacgattgttttt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2685 aactctcgaccacttaaaagcgtacacatacgttcattatgttatttgacgattggatag 2744
Query: 171 gttcaaagtcggtgcgtaaagttcttgctgtcgctgtgatttgatttcatcagaactttt 230
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2745 gttcaaagtcggtgcgtaaagttcttgctgtcgctgtgacgtgatttcaacagaactttt 2804
Query: 231 gttcgatgactttggtagaattaacatttcacaggattttttttttattcaaagggcttt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2805 gttcgatgactttggtagaattaacatttcacaggattttttttttattcaaagggcttt 2864
Query: 291 ctcatactggcatctcgacaataagttacagagcgaaacgg-atagagttttgg-ttgca 348
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 2865 ctcatactggcatctcgacaataagttacagagcgaaacgggatagagttttgggttgca 2924
Query: 349 tttatattatcgtgcttgtgatagaagagtgtttatatggttcaatagaatatacaccta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2925 tttatattatcgtgcttgtgatagaagagtgtttatatggttcaatagaatatacaccta 2984
Query: 409 attgagtgttaaataataattttaaaagccttcatcacctagcttactttctaaatgcac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 attgagtgttaaataataattttaaaagccttcatcacctagcttactttctaaatgcac 3044
Query: 469 tatgttctgatcaatttctgaaagattagttttcaaggatatcgcttcctcgaagcgcct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 tatgttctgatcaatttctgaaagattagttttcaaggatatcgcttcctcgaagcgcct 3104
Query: 529 ttccttggcagctgaattaagcatattttcgactaagtatcgttgttcattcaaaaccat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 ttccttggcagctgaattaagcatattttcgactaagtatcgttgttcattcaaaaccat 3164
Query: 589 aagttcttctctgtacttctttacttccgcaattgttaaattattgaacaaaagatccga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 aagttcttctctgtacttctttacttccgcaattgttaaattattgaacaaaagatccga 3224
Query: 649 tgatgttgtgacttctactttctgtgacacagggttcaagatttctggtatttttttcaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tgatgttgtgacttctactttctgtgacacagggttcaagatttctggtatttttttcaa 3284
Query: 709 gggtagcattttctcctcgatgaacgctgatgcatgtagggcaattgactgttgtatttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3285 gggtagcattttctcctcgatgaacgctgatgcatgtagggcaattgactgttgtatttt 3344
Query: 769 cttctctgctgttgattttgtatccaactgaacaatgctttttgataatttgtcataaag 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3345 cttctctgctgttgattttgtatccaactgaacaatgctttttgataatttgtcataaag 3404
Query: 829 cgttaaatctttgaatagcttctctcttaattgcgctaggttttgaatcgcaatctcatc 888
|||||||| || |||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct: 3405 cgttaaattttgtaatagctttcttcttaattgtgctaggttttgaatcgcagtctcatc 3464
Query: 889 tgaagcgggggcatnatgtatcgaaacttaagcgtttcgggtatctggggggtcatttta 948
||||||||| |||| |||||||||| || | || |||| || |||||||| || | ||||
Sbjct: 3465 tgaagcgggtgcattatgtatcgaatctaatgc-tttctggaatctggggagtaaattta 3523
Query: 949 ccacaaccgtttcg 962
| |||| |||||||
Sbjct: 3524 ctacaagcgtttcg 3537
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9398
Number of Sequences: 1807
Number of extensions: 9398
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)