BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD02FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1238 515 e-146
3x_Contig971 496 e-140
>3x_Contig1238
Length = 5289
Score = 515 bits (260), Expect = e-146
Identities = 307/318 (96%), Gaps = 4/318 (1%)
Strand = Plus / Minus
Query: 648 gttcaggaacttcaacga-taggaattttgggatcaattggcttgtactgttcatatgat 706
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5289 gttcaggaacttcaacgaataggaattttgggatcaattggcttgtactgttcatatgat 5230
Query: 707 tcgaatattggaagaatcatgggttctatcgtagtagatttacctttactaccattgtca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5229 tcgaatattggaagaatcatgggttctatcgtagtagatttacctttactaccattgtca 5170
Query: 767 ttttttagaatatccttggaatttacattattgttnttttcttcatgagatggggatgcc 826
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5169 ttttttagaatatccttggaatttacattattgtttttttcttcatgagatggggatgcc 5110
Query: 827 gcaatggcaatctttgtgtccagcctttctccctgcttagtggttgactcatcctggaaa 886
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5109 gcaatggcaatctttgtgtccagcctttctccctgcttagtggttgacttatcctggaaa 5050
Query: 887 tgtctgnatattgtggtttngtagttcagtatgttcgaaaattatagtattgagga-cag 945
|||||| |||||||||||| ||||||||||||| ||||||| ||||| |||||| |||
Sbjct: 5049 tgtctggatattgtggttt-gtagttcagtatggtcgaaaa-tataggtatgaggatcag 4992
Query: 946 ctcccaaatgttccgcat 963
||||||||||||||||||
Sbjct: 4991 ctcccaaatgttccgcat 4974
>3x_Contig971
Length = 3245
Score = 496 bits (250), Expect = e-140
Identities = 280/286 (97%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 88 ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2963 ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 3022
Query: 148 tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 3082
Query: 208 tgccataatcattttttaatgcaagtctagtttataatgttacatgccacttttgtctca 267
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3083 tgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttgtctca 3142
Query: 268 ttatgtcattacatttttctctatgcaataactacgtgaggaaaccaaacgactattcta 327
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3143 ttatgtcattacatttttctctatgcaataactacgtgagg-aaccaaacgactattcta 3201
Query: 328 agaaactcatttacaaagttgttcaagctcctcattcgccagtaaa 373
||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 3202 agacactcatttac-aagttgttcaagct-ctcattcgccagtaaa 3245
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7005
Number of Sequences: 1807
Number of extensions: 7005
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)