BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD02RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1626 0.0
>3x_Contig1712
Length = 23668
Score = 1626 bits (820), Expect = 0.0
Identities = 877/892 (98%), Gaps = 4/892 (0%)
Strand = Plus / Plus
Query: 44 gctttgcaagaagtatttggaggcttggttgtcaccaccttcggattgaataggttcgat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11488 gctttgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgat 11547
Query: 104 gatcaaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaaca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11548 gatcaaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaaca 11607
Query: 164 acggtcatcttccttcttattttcttcctcattttcggacaatgggtatttgtatactgg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11608 acggtcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgg 11667
Query: 224 gtattcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaaca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11668 gtattcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaaca 11727
Query: 284 agtagatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11728 agtagatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagc 11787
Query: 344 caattgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11788 caattgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaa 11847
Query: 404 gtcaataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11848 gtcaataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgc 11907
Query: 464 caattcattggcatcggcaccagaaagaccggaccaaattttattttgaccctttggagc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11908 caattcattggcatcggcaccagaaagaccggaccaaattttattttgaccctttggagc 11967
Query: 524 aaatttcaataattgcttcaagatatcttccaaatcagcacctggaaagttacccaaagc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11968 aaatttcaataattgcttcaagatatcttccaaatcagcacctggaaagttacccaaagc 12027
Query: 584 tggtctgtcaaccaaagctctaatcattttgtcggacttggcagcttcaatcaaagctgg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12028 tggtctgtcaaccaaagctctaatcattttgtcggacttggcagcttcaatcaaagctgg 12087
Query: 644 gttgttgtaacctagagcaatggaagaaatttgggcgtaaacatccaagaatttattacc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12088 gttgttgtaacctagagcaatggaagaaatttgggcgtaaacatccaagaatttattacc 12147
Query: 704 gtcaacgtcaacgatgtagttaccagaagacttggcattatcagcaacgaaataagctgg 763
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12148 gtcaacgtcaacgatgtagttaccagaagacttggcataatcagcaacgaaataagctgg 12207
Query: 764 tctagaatcgaaaacttctcctagagaagcgaccttagccttgnactcangacctgnaaa 823
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct: 12208 tctagaatcgaaaacttctcctagagaagcgaccttagccttggactcaggacctgg-aa 12266
Query: 824 tctctga-gtaacgacctttggttcagtgggtttcgttgggtagtacttagcagcaacgg 882
||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 12267 tctctgaggtaacgacctttggttcagttggttcgtttgggtagtacttagcagcaacgg 12326
Query: 883 acatcttttcctaattc-aatgattactctgtgcttgtgnacttgggtgtaa 933
||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 12327 acatcttttcctaattcaaatgattactctgtgcttgtggac-tgggtgtaa 12377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7421
Number of Sequences: 1807
Number of extensions: 7421
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)