BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig691 1655 0.0
>3x_Contig691
Length = 2698
Score = 1655 bits (835), Expect = 0.0
Identities = 874/885 (98%), Gaps = 2/885 (0%)
Strand = Plus / Minus
Query: 87 ccgttatcctgatagtttctcaaagtggaggaaacgttcatcaagaccaagattgggtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ccgttatcctgatagtttctcaaagtggaggaaacgttcatcaagaccaagattgggtta 904
Query: 147 cctgtggaattcacaccctcacataaatcagaagatacatagtattctgggaaagtcacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 cctgtggaattcacaccctcacataaatcagaagatacatagtattctgggaaagtcacc 844
Query: 207 ggagtctttccatccttcaaagtagaaacatgaaccaagtcaccatacttaacaacacct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ggagtctttccatccttcaaagtagaaacatgaaccaagtcaccatacttaacaacacct 784
Query: 267 ctagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatgagaggac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatgagaggac 724
Query: 327 tctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaaagccaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaaagccaaa 664
Query: 387 gataacaacaaagtactacacttcatgactgaattattaatggctcaataactgatgtcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gataacaacaaagtactacacttcatgactgaattattaatggctcaataactgatgtcg 604
Query: 447 ttatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctattcaatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctattcaatct 544
Query: 507 tgatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtacaaaattta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtacaaaattta 484
Query: 567 taatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctcaaacttcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctcaaacttcc 424
Query: 627 gaaaaagtagtttgtttaccagaagaaaacatttttgcagttcacccaagcctttgcatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaaaaagtagtttgtttaccagaagaaaacatttttgcagttcacccaagcctttgcatt 364
Query: 687 gagattggttcggacgaaccatccgcctagatctcggatctaagtttaatcgcagagaca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagattggttcggacgaaccatccgcctagatctcggatctaagtttaatcgcagagaca 304
Query: 747 tcgccgcataaccacatcgctccagccaggnngtgtttntcttttggtcttatatgagcc 806
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 303 tcgccgcataaccacatcgctccagccagg-tgtgtttttcttttgttcttatatgagcc 245
Query: 807 ggtcctttgctgaaaagccagtctgaacgcaggcccaacgcacacaactcacacacaccc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggtcctttgctgaaaagccagtctgaacgcaggcccaacgcacacaactcacacacaccc 185
Query: 867 ttcaatgggaacgttgaggcattgctaagtagatagctgctatgagcccttgttatgcca 926
| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 184 tcaaatggaaacgttgaggcattgctaagtagatagctgctatgagccttgtttatgcca 125
Query: 927 aacatgcttatacggttggctgagatccgaaatt-ctcagaaact 970
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 124 aacatgcttatacggttggctgagatccgaaattcctcagaaact 80
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5482
Number of Sequences: 1807
Number of extensions: 5482
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)