BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD06RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1552 0.0
>3x_Contig1739
Length = 22061
Score = 1552 bits (783), Expect = 0.0
Identities = 901/929 (96%), Gaps = 11/929 (1%)
Strand = Plus / Plus
Query: 44 gctttttattcggcctgatctttttcgacctttctttcaaataacgagatgatatcttac 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9352 gctttttattcggcctgatctttcgcgacctttctttcaaataacgagatgatatcttac 9411
Query: 104 tctccctacagtgcaaattgatgaaaaagctttacattggaaatattcaaatgttttttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9412 tctccctacagtgcaaattgatgaaaaagctttacattggaaatattcaaatgttttttt 9471
Query: 164 ctctggattttagttgtttttttttcgacctttgacgattttctgtattttttttataaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 9472 ctctggattttagttgtttttttttcgacctttgacgattttctgtattttttcga-aaa 9530
Query: 224 gttaatagtcaattttgtcttttactagtatgaaatgccaattgtgtcacgtacagagct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9531 gttaatagtcaattttgtcttttactagtatgaaatgccaattgtgtcacgtacagagct 9590
Query: 284 gacaattaaacttaaatcataattacaggttttagaatacatatgaaactccccgaatgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9591 gacaattaaacttaaatcataattacaggttttagaatacatatgaaactccccgaatgt 9650
Query: 344 tttttttattatattgacaaatgacacgacgaaggtccaattttttgctatgtaaaaatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9651 tttttttattatattgacaaatgacacgacgaaggtccaattttttgctatgtaaaaatt 9710
Query: 404 atatacatttttgatcgatgaagaaaaaaagtctctagaagtggacgaatttctgggcaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9711 atatacatttttgatcgatgaagaaaaaaagtctctagaagtggacgaatttctgggcaa 9770
Query: 464 agttctcatggccatcttcagcgctcttaccgatcttaatatatttatcattttttatgt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9771 agttctcatggccatcttcagcgctcttaccgatcttaatatatttatcattttttatgt 9830
Query: 524 tttccttaatattcgtggtgaagtgctattaagtaattatcaaagctttcgaccaactcg 583
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9831 tttccttaata-tcgtggtgaagtgctattaagtaattatcaaagctttcgaccaactcg 9889
Query: 584 atggatttatcctcaaccatcagttggttcatcacatgagaataataaggatccacgtta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9890 atggatttatcctcaaccatcagttggttcatcacatgagaataataaggatccacgtta 9949
Query: 644 ggtctcaatgggacaactggaagatagtctatatttatgatttgactccaatttttgatc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9950 ggtctcaatgggacaactggaagatagtctatatttatgatttgactccaatttttgatc 10009
Query: 704 acattgcgggccttgatatttatatncgtgtctaaatctggncacctgccaccgaatata 763
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 10010 acattgcgggccttgatatttatatcggtgtctaaatctggcaacctgccaccgaatata 10069
Query: 764 tccagttggttgattggtccctcgtatgataacaaatcacgtattaacataagnattgng 823
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 10070 tccagttggttgattggtccctcgtatgataacaaatcacgtattaacataagatttgtg 10129
Query: 824 tttttcattcatccataggaaacagaatttcaccttggaaattnaggt-acagccaccat 882
||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||||
Sbjct: 10130 -ttttcattcatccataggaaaca-agattcaccttggaaaattaggtaacagccaccat 10187
Query: 883 ttatcaattgccgatgactaggaacgtactgata--ggttctatattattgaattgcaaa 940
|||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 10188 ttatcaattgccgatgacta-gaacgtactgataaggtttctatattattgaattgcaag 10246
Query: 941 ag-tgca-tttatcatcgta-aaactcaa 966
|| |||| |||||||||||| ||||||||
Sbjct: 10247 agttgcattttatcatcgtagaaactcaa 10275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9509
Number of Sequences: 1807
Number of extensions: 9509
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)