BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD07FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1374 0.0
>3x_Contig1775
Length = 26320
Score = 1374 bits (693), Expect = 0.0
Identities = 804/834 (96%), Gaps = 6/834 (0%)
Strand = Plus / Minus
Query: 102 ttgatagtgtcagaattggttttacgaaatgtcgggtaaagctgctaaaggaaacaaaga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14029 ttgatagtgtcagaattggttttacgaaatgtcgggtaaagctgctaaaggaaacaaaga 13970
Query: 162 acgccagctggaactgaactacttatatagtgataagattggagagatgatatatgatgg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13969 acgccagctggaactgaactacttatatagtgataagattggagagatgatatatgatgg 13910
Query: 222 cacttgcttaatttttaaaaacatgccacctcgtgcaaatgatgaggcttctcctccctt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13909 cacttgcttaatttttaaaaacatgccacctcgtgcaaatgatgaggcttctcctccctt 13850
Query: 282 attcactgagttaacccatacatcggccatgccctaacccaaaatttcccctaaagctac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13849 attcactgagttaacccatacatcggccatgccctaacccaaaatttcccctaaagctac 13790
Query: 342 agtaagatattttaaagattccaaagcataacatccctatgtactgcggtacttgctatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13789 agtaagatattttaaagattccaaagcataacatccctatgtactgcggtacttgctatt 13730
Query: 402 agccggaagaacgttgagaagcaacgagcagttcaaagagggatagtgctggggtaaagg 461
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13729 agccggaagaacgttgagaagcagcgagcagttcaaagagggatagtgctggggtaaagg 13670
Query: 462 acgatccacaaatagaagaccgatatcccccaatcttagtaaagttgacacataatatta 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13669 acgatccacaaatagaagaccgatatcccccaatcttagtaaagttgacacataatatta 13610
Query: 522 cttaatactgacagccaattatgtggttcagtctttctgaataagtctcactctggttgt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13609 cttaatactgacagccaattatgtggttcagtctttctgaataagtctcactctggttgt 13550
Query: 582 gaggctgcccctgcatcctctccaccctcgacataacatgcattaagtatgcggtgtacg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13549 gaggctgcccctgcatcctctccaccctcgacataacatgcattaagtatgcggtgtacg 13490
Query: 642 agaattgccaatttctggattacctaagcaaactgacgcagcttgtaaaaaaacgcatca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13489 agaattgccaatttctggattacctaagcaaactgacgcagcttgtaaaaaaacgcatca 13430
Query: 702 aaaaatggtgagagcaaacaaaagactgttaacgaggttagtacggaacgtgagcgta-g 760
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
Sbjct: 13429 aaaaatggtgagagcaaacaaaagactgtaaagaaggttagtacggaacgtgag-gtagg 13371
Query: 761 ttttctgaaatgtca-ttagatcattattagtttacatatctgtatttacatatctgtag 819
||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 13370 ttttctg-aatgtcatttaaatcattattaatttacatatctgtatttacatatctgtag 13312
Query: 820 cgcaatttgatagtgtaaagtactggcattaactgntgcagtnagccctgaatttacttt 879
|||||||||||||||||||||| ||| |||||||| || || | |||||||| |||
Sbjct: 13311 cgcaatttgatagtgtaaagtagtggaattaactgttgaggtagttcttgaatttatttt 13252
Query: 880 ttcttatcttgcctatngcgaca-tttcatggatagcatggaaatgcgaagaat 932
||||| |||| ||| | ||| ||||||||||||||||||| ||||||||||
Sbjct: 13251 ttctttctttgcttattg-tacattttcatggatagcatggaattgcgaagaat 13199
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5061
Number of Sequences: 1807
Number of extensions: 5061
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)