BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD07RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 519 e-147
3x_Contig139 422 e-118
>3x_Contig1220
Length = 4729
Score = 519 bits (262), Expect = e-147
Identities = 369/400 (92%), Gaps = 4/400 (1%)
Strand = Plus / Plus
Query: 287 aacctatagatacgctgtgcctagcacaaaatatgtgagtatctccaaaatgctaggcaa 346
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14 aacctatagatacgctg-gcctagcacaaaatatgtgagtatccccaaaatgctaggcaa 72
Query: 347 atattgagcggtttttggaatctactttttctttta-tagagaaatcagtacccanagtc 405
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 73 atattgagcggtttt-ggaatctacttttttttttaatagagaaatcagtacccaaagtc 131
Query: 406 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 191
Query: 466 ncattccctttcttgctcatatagaggaactatattgaaagcatgctaagaccctagaat 525
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 192 ccattccctttcttgctcatatagaggaactatattgaaggcatgctaagacctaagaat 251
Query: 526 ccaccaccgtaaaaacttcattctacattcttaaattcaagggaatttaaaagaccaaaa 585
||||||||||||||||| |||||||||| || |||| |||| |||| ||||||| ||||
Sbjct: 252 ccaccaccgtaaaaactccattctacatactaaaatcaaaggaaattaaaaagacaaaaa 311
Query: 586 aaaaaaccccgaagggaaaacagtgtattaaccttttgcaaaattcaagaacagtttcca 645
||||||| |||||||||||||||||||| | ||||| ||||| | ||||||||| | ||
Sbjct: 312 aaaaaacaccgaagggaaaacagtgtatgatcctttggcaaactccaagaacagctcaca 371
Query: 646 gcatgaatttccctaatttcctgcaaaaaaaaaaaggaaa 685
|||||| ||||||||| |||||||||||||| | ||||||
Sbjct: 372 gcatgattttccctaa-ttcctgcaaaaaaagagaggaaa 410
>3x_Contig139
Length = 903
Score = 422 bits (213), Expect = e-118
Identities = 216/217 (99%)
Strand = Plus / Plus
Query: 45 gcttcagaattaggaagaaggaatataggatgatgatataacaatttaaaggaaataata 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttcagaattaggaagaaggaagataggatgatgatataacaatttaaaggaaataata 180
Query: 105 taacacaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcaga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacacaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcaga 240
Query: 165 atgaatgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgaatgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatc 300
Query: 225 ataaaaagcatccacatatatatatatatatatatat 261
|||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataaaaagcatccacatatatatatatatatatatat 337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,533
Number of Sequences: 1807
Number of extensions: 23533
Number of successful extensions: 3164
Number of sequences better than 1.0e-20: 2
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)