BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZD08RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig361                                                          904   0.0  

>3x_Contig361 
          Length = 1383

 Score =  904 bits (456), Expect = 0.0
 Identities = 524/541 (96%), Gaps = 5/541 (0%)
 Strand = Plus / Minus

                                                                        
Query: 424  caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 1311

                                                                        
Query: 484  gcttcataaaacgcgacagcctcggaagagtaatttgaaagatcccgttcactcttagca 543
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 gcttcataaaacgcgaca-cctcggaagagtaatttgaaagatcccgttcactcttagca 1252

                                                                        
Query: 544  ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 1192

                                                                        
Query: 604  gatactggcgtcgttaccgttgactgggagctntgtcttgtatctttctcatacatttgg 663
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1191 gatactggcgtcgttaccgttgactgggagctttgtcttgtatctttctcatacatttgg 1132

                                                                        
Query: 664  tatggaatattcgtatctgcaacatgattctggggcagatcatcaaccggatatggtgta 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 tatggaatattcgtatctgcaacatgattctggggcagatcatcaaccggatatggtgta 1072

                                                                        
Query: 724  ttcttacttggctcgtgacctggcgggtacatgtttatgtagttgccatacgcgtttctt 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ttcttacttggctcgtgacctggcgggtacatgtttatgtagttgccatacgcgtttctt 1012

                                                                        
Query: 784  tgtcggttggtatccattctatttctctcagaagaacga-ttaccaatgtcctatccttt 842
            ||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||| ||
Sbjct: 1011 tgtcggttgttatccattctatttctctcaagagaacgatttaccaatgtcctatcc-tt 953

                                                                        
Query: 843  tctacgaattcttcccgtgc-aacgctttcgaatccaatactacttgcagagcaactcac 901
            ||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 952  tctacgaatttcttccgtgcaaacgctttcgaatccaatactacttgcagagcaactcac 893

                                                                        
Query: 902  tta-ccacagactcaagctgataccanagggcagtggtttcanaaacctagttgaaatgc 960
            ||| |||||||||||||||||||||| ||||||||| || || || ||||||||||||||
Sbjct: 892  ttacccacagactcaagctgataccagagggcagtgtttccagaagcctagttgaaatgc 833

             
Query: 961  t 961
            |
Sbjct: 832  t 832


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4787
Number of Sequences: 1807
Number of extensions: 4787
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)