BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD09FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1663 0.0
>3x_Contig1793
Length = 40499
Score = 1663 bits (839), Expect = 0.0
Identities = 883/893 (98%), Gaps = 4/893 (0%)
Strand = Plus / Plus
Query: 86 tagaacagcggacagtgcttattaaacctactttcattcgctgttgggctgcagaacaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 tagaacagcggacagtgcttattaaacctactttcattcgctgttgggctgcagaacaat 4215
Query: 146 tattgggtgaggaccattttagccttgtatacaatttttgcttttttatattttcattca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4216 tattgggtgaggaccattttagccttgtatacaatttttgcttttttatattttcattca 4275
Query: 206 taaaatctatagaaaaaacttataataatgttaaacgattatctcccccatatatcttcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 taaaatctatagaaaaaacttataataatgttaaacgattatctcccccatatatcttcg 4335
Query: 266 aagtgtcaaaagaatgttctttatcttcgctgagatttggtgtaagtgaagttcctgaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 aagtgtcaaaagaatgttctttatcttcgctgagatttggtgtaagtgaagttcctgaca 4395
Query: 326 acatgcgcaatacagataagtaatattgtagttatgtattaagcacatagaagtaaaagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 acatgcgcaatacagataagtaatattgtagttatgtattaagcacatagaagtaaaagg 4455
Query: 386 taacgaagttacaaattgtatcgttttgtattgagtgatgtagttgagtgacctttgaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 taacgaagttacaaattgtatcgttttgtattgagtgatgtagttgagtgacctttgaag 4515
Query: 446 taggttctgcagcgagagagggaactaaagagacaactggactttgttgaacgtaaaagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 taggttctgcagcgagagagggaactaaagagacaactggactttgttgaacgtaaaagt 4575
Query: 506 ggtatggcttctttccggccgaaagtggtgcgtggaaaatttcagtagttactgcaacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 ggtatggcttctttccggccgaaagtggtgcgtggaaaatttcagtagttactgcaacaa 4635
Query: 566 tgactaaaaacgtggaatgtatttctatgtgcaccctaaaacagtccgggtaataacatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 tgactaaaaacgtggaatgtatttctatgtgcaccctaaaacagtccgggtaataacatg 4695
Query: 626 gatctgcaaaggtgaaggaatgagaaacagagaggacgggtgagtcgaaaggacgatttt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4696 gatctgcaaaggtgaaggaatgagaaacagagaggacgggtgagtcgaaaggacgatttt 4755
Query: 686 ttatgagtagatcagatctganaataatttcgtagcattcaggtactcaagatagtactc 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4756 ttatgagtagatcagatctgaaaataatttcgtagcattcaggtactcaagatagtactc 4815
Query: 746 ggagtaaacgttaaaacatgtggtagaagtctcttgtatttcacatacatattncattat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4816 ggagtaaacgttaaaacatgtggtagaagtctcttgtatttcacatacatatttcattat 4875
Query: 806 atgtatgtatttgcacctaattttcatagtgtgagtgtaacgattattaaaactatatat 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4876 atgtatgtatttgcacctaattttcatagtgtgagtgtaacgattattaaaactatatat 4935
Query: 866 taagggaaaactg-aaaagcgagcagtcaacaattacggaatatgcataaat-tggaaga 923
|||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4936 taaggg-aaactgaaaaagcgagcagtcaacaattacggaatatgcataaatatggaaga 4994
Query: 924 tgacatttaagtggtatttattagatgtgatgagaagagtagtattacgtttt 976
|||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct: 4995 tgacatttaagt-gtatttaatagatgtgatgagagaggtagtattacgtttt 5046
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6290
Number of Sequences: 1807
Number of extensions: 6290
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)