BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZD09RM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1643 0.0
>3x_Contig1793
Length = 40499
Score = 1643 bits (829), Expect = 0.0
Identities = 906/928 (97%), Gaps = 4/928 (0%)
Strand = Plus / Minus
Query: 46 cttggtgtcaggtgatttttgttattgagattcccttgattctattgaacattggttaag 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27497 cttggtgtcaggtgatttttgtgattgagattcccttgattctattgaacattggttaag 27438
Query: 106 tgctcatgtaatgagcacaggaaagcgttcaatgcattccttttttctaatttgtttttg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27437 tgctcatgtaatgagcacaggaaagcgttcaatgcattccttttttctaatttgtttttg 27378
Query: 166 tttactggtggaatggcatattttggaaatgattttaaaagatcaaaatttatatttttg 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 27377 tttactggtggaatggcatattttggaaatgattttaaaagatcaaaatttagaggaagg 27318
Query: 226 aagtgaaataactttctgtactgaagagaaataaaagatcaaatgcaaccggagcaagag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27317 aagtgaaataactttctgtactgaagagaaataaaagatcaaatgcaaccggagcaagag 27258
Query: 286 taacctttttcgtggtattacgagccaatattaccccattgcacaatttagaatgttttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27257 taacctttttcgtggtattacgagccaatattaccccattgcacaatttagaatgttttg 27198
Query: 346 attcctctaatcgacggccaaggccttctttatttctgcgatagctctacctggattcaa 405
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27197 aatcctctaatcgacggccaaggccttctttatttctgcgatagctctacctggattcaa 27138
Query: 406 accctttggacaagttctagtacagttcataattgtgtggcatctgtacaaagacatgga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27137 accctttggacaagttctagtacagttcataattgtgtggcatctgtacaaagacatgga 27078
Query: 466 gttttgtagcatttgctttctgataccagcagcttcgtctcttgaatccaccaaccaacg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27077 gttttgtagcatttgctttctgataccagcagcttcgtctcttgaatccaccaaccaacg 27018
Query: 526 gtatgcttgcattaaaacagcaggacctaaatattgttcttggttccaccagtaagatgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27017 gtatgcttgcattaaaacagcaggacctaaatattgttcttggttccaccagtaagatgg 26958
Query: 586 acaagatgtaatacaacaagcacatagaatacattcatataaaccatccaatttcttacg 645
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26957 acaagatgtagaacaacaagcacatagaatacattcatataaaccatccaatttcttacg 26898
Query: 646 gtcagcaatactttgcaaattttccttaccgtctgcaggtacctcggatctttgcaagta 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26897 gtcagcaatactttgcaaattttccttaccgtctgcaggtacctcggatctttgcaagta 26838
Query: 706 tggctgaatagacttatattgtttgtagaaatgagtcaaatccggaaccaaatctctgac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837 tggctgaatagacttatattgtttgtagaaatgagtcaaatccggaaccaaatctctgac 26778
Query: 766 -atatacatgtgaggaagtgggtagatctttgtttgtttattttcattttggncgattct 824
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26777 aatatacatgtgaggaagtgggtagatctttgtttgtttattttcattttggtcgattct 26718
Query: 825 gcacaaacaggccanagtgttcctaccaccaatattcatagcacaagaaccacaaatacc 884
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26717 gcacaaacaggccaaagtgttcctaccaccaatattcatagcacaagaaccacaaatacc 26658
Query: 885 ttctctacagnatcttcttgaggtcaaagtagcatctttggtcgtttttaaatcttaatc 944
|||||||||| ||||||| |||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 26657 ttctctacaggatcttctgaaggtcaaagtagcatc-ttgttcgttttt-aatcttaatc 26600
Query: 945 aaa-cgtncaaaaccatagnaccacatt 971
||| ||| ||||||||||| ||||||||
Sbjct: 26599 aaagcgtccaaaaccataggaccacatt 26572
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7928
Number of Sequences: 1807
Number of extensions: 7928
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)