BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE02FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1513 0.0
>3x_Contig1673
Length = 13723
Score = 1513 bits (763), Expect = 0.0
Identities = 846/867 (97%), Gaps = 5/867 (0%)
Strand = Plus / Minus
Query: 85 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 5447
Query: 145 ggatcagcacagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5446 ggatcagcacagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 5387
Query: 205 tatgaagttgataaagcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 tatgaagttgagaaagcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 5327
Query: 265 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 5267
Query: 325 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 5207
Query: 385 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 5147
Query: 445 agtccttgctgagaaaacatcttctttggatgatatctttgtttatattcatccaacctc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 agtccttgctgagaaaacatcttctttggatgatatctttgtttatattcatccaacctc 5087
Query: 505 aattctcaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 aattctcaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 5027
Query: 565 caataaaaataatgaaaaggcgaaaacaaggatgaagtctctttgtgacattaaaagcac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 caataaaaataatgaaaaggcgaaaacaaggatgaagtctctttgtgacattaaaagcac 4967
Query: 625 gccattggctaacgttgcaagaaagggctcgttactcacttacggaaaaccaatcactgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 gccattggctaacgttgcaagaaagggctcgttactcacttacggaaaaccaatcactgg 4907
Query: 685 acaaggtttgaaacctattgatttatcgccaacagaaagattctgctatgttgttcctag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 acaaggtttgaaacctattgatttatcgccaacagaaagattctgctatgttgttcctag 4847
Query: 745 atttggatcttgcaatgatagcgacatcaagattggtttgggaactcaatcctatccctg 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4846 atttggatcttgcaatgatagcgacatcaagattgg-ttgggaactcaatcctatccctg 4788
Query: 805 gtcatcaagagaaagagaaaggtgtatggacggtcaa-aaaatccttactcc-aaagcat 862
|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 4787 ttcatcaagagaaagagaaaggtgtatggacggtcaagaaattccttactccaaaagcat 4728
Query: 863 tt-aaaactatcaagctttcgaaagacccctaaacttacccagtacattttatagaatta 921
|| ||||||||||||||| |||||||| |||| |||||||| ||||||||||||
Sbjct: 4727 ttaaaaactatcaagcttcgaaaagaccctagaactacaccagtacaatttatagaatta 4668
Query: 922 att-acttatattatacccattgcatt 947
||| ||| |||| ||||| ||||||||
Sbjct: 4667 attaactcatataataccaattgcatt 4641
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7631
Number of Sequences: 1807
Number of extensions: 7631
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)