BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE02RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 1076 0.0
>3x_Contig1069
Length = 3994
Score = 1076 bits (543), Expect = 0.0
Identities = 564/571 (98%)
Strand = Plus / Plus
Query: 44 gcttttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtcag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 gcttttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtcag 3483
Query: 104 aggtgtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 aggtgtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaaaa 3543
Query: 164 aattcactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgctt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 aattcactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgctt 3603
Query: 224 catctgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataaaagaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3604 catctgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataccggaga 3663
Query: 284 attagatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagggt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3664 attagatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagggt 3723
Query: 344 aaatctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtggt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3724 aaatctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtggt 3783
Query: 404 gctttaaaccatcgatggcaaacggcgagatataattttctgcagatccgccaccgatcc 463
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3784 gctttaaaccatcgatggcaaacggcgagatataaccccctgcagatccgccaccgatcc 3843
Query: 464 agttgtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagccttct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3844 agttgtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagccttct 3903
Query: 524 cgtactccttttgatcttctcttaggagttcaacatcttgagaatgttttgaatgtacaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3904 cgtactccttttgatcttctcttaggagttcaacatcttgagaatgttttgaatgtacaa 3963
Query: 584 aacctttgttgccaaatctcttctgtgcatt 614
|||||||||||||||||||||||||||||||
Sbjct: 3964 aacctttgttgccaaatctcttctgtgcatt 3994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,297
Number of Sequences: 1807
Number of extensions: 18297
Number of successful extensions: 2880
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)