BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE03RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 1721 0.0
>3x_Contig1702
Length = 15454
Score = 1721 bits (868), Expect = 0.0
Identities = 898/908 (98%), Gaps = 1/908 (0%)
Strand = Plus / Minus
Query: 48 cgatgcatcgtagaatactgtctcgccactttttgattttccggaagagatgtgggagat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 cgatgcatcgtagaatactgtctcgccactttttgattttccggaagagatgtgggagat 2373
Query: 108 cttcgaccactgaccggctatcgtatacaaagcgttatgcttgtcattggagtcgttaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 cttcgaccactgaccggctatcgtatacaaagcgttatgcttgtcattggagtcgttaaa 2313
Query: 168 acttttaaagattcttgccttaaaagaattcttcttaccgctgaaataactcttacctga 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2312 acttttaaagattcttgccttaaaagaattcttcttaccgctgaaataacccttacctga 2253
Query: 228 aaactcaatagaacagtaaagaccattggaagcttgaatgtatgatttaccttccaattc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aaactcaatagaacagtaaagaccattggaagcttgaatgtatgatttaccttccaattc 2193
Query: 288 tacgaatggggaagcagctaaaagaccttcgatatgcaaaggaggtaatgtaatcaagta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 tacgaatggggaagcagctaaaagaccttcgatatgcaaaggaggtaatgtaatcaagta 2133
Query: 348 ctgttcgtttaatttaccaaagtttaagatggcgtgtccgtattgcttcacattcaatga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ctgttcgtttaatttaccaaagtttaagatggcgtgtccgtattgcttcacattcaatga 2073
Query: 408 catcttggagatcgatgctttaacttggttgtaaccttccaaactcacctgattcttatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 catcttggagatcgatgctttaacttggttgtaaccttccaaactcacctgattcttatc 2013
Query: 468 attgaagattgtataagcagtgataggaggatgatgagaaacttgttcagataataagac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 attgaagattgtataagcagtgataggaggatgatgagaaacttgttcagataataagac 1953
Query: 528 ggtttcaccaaattcaggattcgatttgttgttccatttcccaacgaacacctctcctaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ggtttcaccaaattcaggattcgatttgttgttccatttcccaacgaacacctctcctaa 1893
Query: 588 gaatgggtttaaaggtttcttctcagatcccatggactcattacgagaacaatactgtga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 gaatgggtttaaaggtttcttctcagatcccatggactcattacgagaacaatactgtga 1833
Query: 648 tttcaaagttgaaataaaccatttaacaacggccaacatacgcaacaattctgggggcgt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 tttcaaagttgaaataaaccatttaacaacggccaacatacgcaacaattctgggggcgt 1773
Query: 708 accatcactatcangttcagtgatgaaagaaagttctaagaacaagtcaggatgttcagc 767
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1772 accatcactatcaggttcagtgatgaaagaaggttctaagaacaagtcaggatgttcagc 1713
Query: 768 ccagtactcagagtattcagtcaacgaaaccggtgaaagaatgaatggnggcgcagttaa 827
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1712 ccagtactcagagtattcagtcaacgaaaccggtgaaagaatgaatgggggcgcagttaa 1653
Query: 828 agatgaaaggtcaccattgaatgatgagatagacttcaaaaatgaagtccatgacgatga 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 agatgaaaggtcaccattgaatgatgagatagacttcaaaaatgaagtccatgacgatga 1593
Query: 888 actggcgtactgagacatatttnagttgggttcctacctttgg-tgaaaaaatttttntt 946
|||||||||||||||||||||| |||||| ||||||||||||| ||| || |||||| ||
Sbjct: 1592 actggcgtactgagacatatttgagttggtttcctacctttggatgataatatttttttt 1533
Query: 947 ccctttct 954
||||||||
Sbjct: 1532 ccctttct 1525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7164
Number of Sequences: 1807
Number of extensions: 7164
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)