BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC19ZE04RM1.SCF screened BAC_end (979 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1340 735 0.0 >3x_Contig1340 Length = 7156 Score = 735 bits (371), Expect = 0.0 Identities = 413/423 (97%), Gaps = 3/423 (0%) Strand = Plus / Plus Query: 43 gctttaaagatcccattgaaaaattgg-cagaaattaaaatatccgggtaacgaaatatt 101 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 4714 gctttaaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatt 4773 Query: 102 tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4774 tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 4833 Query: 162 tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattcttttttt 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 4834 tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagct 4893 Query: 222 cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4894 cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 4953 Query: 282 aaagggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagct 341 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4954 aaa-ggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagct 5012 Query: 342 gggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgac 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5013 gggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgac 5072 Query: 402 atcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcatgggcctgtata 461 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 5073 atcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatca-ggggctgtata 5131 Query: 462 tat 464 ||| Sbjct: 5132 tat 5134 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 26,531 Number of Sequences: 1807 Number of extensions: 26531 Number of successful extensions: 2456 Number of sequences better than 1.0e-20: 1 length of query: 979 length of database: 10,358,551 effective HSP length: 16 effective length of query: 963 effective length of database: 10,329,639 effective search space: 9947442357 effective search space used: 9947442357 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)