BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE06FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1618 1477 0.0
>3x_Contig1618
Length = 12146
Score = 1477 bits (745), Expect = 0.0
Identities = 771/777 (99%), Gaps = 2/777 (0%)
Strand = Plus / Minus
Query: 86 taactcaagctttccgtaaatcaattggtatcaagattaaggaagaaaccgaattgattg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 taactcaagctttccgtaaatcaattggtatcaagattaaggaagaaaccgaattgattg 6980
Query: 146 aaggtgaggttgtggaaatccagatcgatagatcaatcactggtggccataaacaaggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979 aaggtgaggttgtggaaatccagatcgatagatcaatcactggtggccataaacaaggta 6920
Query: 206 aattgaccattaaaaccacagacatggaaactatttatgagttgggtaataagatgattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 aattgaccattaaaaccacagacatggaaactatttatgagttgggtaataagatgattg 6860
Query: 266 aaggtctaactaaagaaaaggttcttgctggtgatgttatctctatagataaggccagtg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6859 aaggtctaactaaagaaaaggttcttgctggtgatgttatctctatagataaggccagtg 6800
Query: 326 gcaagatcaccaaactaggtaggtccttcgcccgttctcgtgattacgatgccatgggtg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799 gcaagatcaccaaactaggtaggtccttcgcccgttctcgtgattacgatgccatgggtg 6740
Query: 386 ccgacacaaagtttgtacagtgccctgagggtgaacttcaaaaaagaaagactgtagttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6739 ccgacacaaagtttgtacagtgccctgagggtgaacttcaaaaaagaaagactgtagttc 6680
Query: 446 acactgtttcattgcatgaaattgatgtgataaactctcgtacacaaggtttcttggctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6679 acactgtttcattgcatgaaattgatgtgataaactctcgtacacaaggtttcttggctt 6620
Query: 506 tgtttaccggtgacacaggtgaaatcagatccgaagttcgtgaccaaattaatacgaaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6619 tgtttaccggtgacacaggtgaaatcagatccgaagttcgtgaccaaattaatacgaaag 6560
Query: 566 tcgcagaatggaaagaagaaggtaaagcagaaattgttccaggtgttctcttcatcgatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6559 tcgcagaatggaaagaagaaggtaaagcagaaattgttccaggtgttctcttcatcgatg 6500
Query: 626 aagttcacatgctagatattgaatgtttttctttcattaaccgtgctttagaagatgagt 685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6499 aagttcacatgctagatattgaatgtttgtctttcattaaccgtgctttagaagatgagt 6440
Query: 686 ttgcaccaatcgtgataatggcaactaaccgtggtatttctaagacccgtggtaccaact 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6439 ttgcaccaatcgtgataatggcaactaaccgtggtatttctaagacccgtggtaccaact 6380
Query: 746 acaaatccccacatggacttcctcttgaccttttggatagatctatcataataactacca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6379 acaaatccccacatggacttcctcttgaccttttggatagatctatcataataactacca 6320
Query: 806 agaattacgatggcaagtgaaatcagaacaatcttaacttatcagaagttcagaaga 862
||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 6319 agaattacgat-gcaagtgaaatcaagacaatcttaac-tatcagaagtacagaaga 6265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7246
Number of Sequences: 1807
Number of extensions: 7246
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)