BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE06RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1566 0.0
>3x_Contig1774
Length = 27771
Score = 1566 bits (790), Expect = 0.0
Identities = 894/919 (97%), Gaps = 8/919 (0%)
Strand = Plus / Plus
Query: 53 ccatggtttgtttcactcaaatcagtcgtggatgatccaccaaaccgtctgtatatacca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6103 ccatggtttgtttcactcaaatcagtcgtggatgatccaccaaaccgtctgtatatacca 6162
Query: 113 aaccctatcgattttttcaaaggtttcaaccgaaacgaaactatatcaccttgagaaact 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6163 aaccctatcgattttttcaaaggtttcaaccgaaacgaaactatatcaccttgagaaact 6222
Query: 173 ttctgccaacgcacaacaaatgatttattttgaacgtcaatagtatccatgtttgatgcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 ttctgccaacgcacaacaaatgatttattttgaacgtcaatagtatccatgtttgatgcc 6282
Query: 233 gaaaaaaatttaatagttacaattgaatcactctcgaaactaagtagacgttccaatcta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6283 gaaaaaaatttaatagttacaattgaatcactctcgaaactaagtagacgttccaatcta 6342
Query: 293 cctttatcggtcggttattcgctgaaaaatcaattctgaataagagagattaaccagggg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 cctttatcggtcggttattcgctgaaaaatcaattctgaataagagagattaaccagggg 6402
Query: 353 aaaagatcaacaaacacctgataggcacgcagtaagaatggtaattattcacaggtgaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aaaagatcaacaaacacctgataggcacgcagtaagaatggtaattattcacaggtgaaa 6462
Query: 413 tttaactgacaatatccgttaccagcaattatcaccaaattgatatatgatgcccgccaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 tttaactgacaatatccgttaccagcaattatcaccaaattgatatatgatgcccgccaa 6522
Query: 473 aagctcgaaacgcacactagaagtctgttatagatgaaatttggatccttgtttacttca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 aagctcgaaacgcacactagaagtctgttatagatgaaatttggatccttgtttacttca 6582
Query: 533 aattaaaggtttagtttattatactcaagcttttttttaattcattttcactgagaagct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 aattaaaggtttagtttattatactcaagcttttttttaattcattttcactgagaagct 6642
Query: 593 gctttggggcaggtactaattttcatcatttaaaaaaaaaaaaaaaaaggtttataatag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 gctttggggcaggtactaattttcatcatttaaaaaaaaaaaaaaaaaggtttataatag 6702
Query: 653 catccaacatgtattcaaatgcaaaacatcggtcaaaaatgtaaaccacaaggaaaacac 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6703 catccaacatgtattcaaatgcaaaacatcggtcaaaaatgtaaaccacaaggaaaacac 6762
Query: 713 aggcactagaggctacaaaactggtgtataactatccgtcatcagttatatttgtgatac 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6763 aggcactagaggctacaaaactggtgtataactatccgtcatcagttatatttgtgatac 6822
Query: 773 ataccatgganaacccgtatgagaaagttc-aagacatattctggctagaatcattggca 831
|||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 6823 ataccatggaaaacccgtatgagaaagttcaaagcaatattctggctagaatcattggca 6882
Query: 832 attgtccaagggttg-accagagtgtagtgattctaaaccaaga-ctttgaagggt-aac 888
| |||| || ||||| |||||||||||||||| ||||||||||| ||| ||||||| |||
Sbjct: 6883 a-tgtcgaaaggttgaaccagagtgtagtgatactaaaccaagagcttcgaagggtaaac 6941
Query: 889 acccagaattagaattttggactgatgtnccaaatgtgttgagacct-tagagaatttgt 947
||| ||||| ||||||| | |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 6942 accaagaataagaatttggaactgatgtcacaaatgtg-tgagaactatagagaatctgt 7000
Query: 948 tgaattnccatttgcaggc 966
|| ||| ||| ||||||||
Sbjct: 7001 tg-atttccagttgcaggc 7018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,323
Number of Sequences: 1807
Number of extensions: 19323
Number of successful extensions: 2832
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)