BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC19ZE07FM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig428 583 e-166 >3x_Contig428 Length = 1780 Score = 583 bits (294), Expect = e-166 Identities = 310/313 (99%), Gaps = 3/313 (0%) Strand = Plus / Minus Query: 103 tagataaagactgaaaatccaatcttggtaatctattttccttttgctgcagcagcccag 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 tagataaagactgaaaatccaatcttggtaatctattttccttttgctgcagcagcccag 575 Query: 163 aatttaagtacctctcgttatggtacgtgatatccttcttttcttttacctctagcaaat 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 aatttaagtacctctcgttatggtacgtgatatccttcttttcttttacctctagcaaat 515 Query: 223 gtgaagacggcaggctagtcttctctttnctagtggttgatgcgaagattccatcgaagg 282 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 514 gtgaagacggcaggctagtcttctctt--ctagtggttgatgcgaagattccatcgaagg 457 Query: 283 ggagggtgtacgttcatccaaaatctcaaaagaatccgatctctccaaactactaccttt 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 ggagggtgtacgttcatccaaaatctcaaaagaatccgatctctccaaactactaccttt 397 Query: 343 gttcaaacactcatcaatatgcgaaccttcntaattctgaaagcggcaggtgcttggagc 402 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 396 gttcaaacactcatcaatatgcgaaccttc-taattctgaaagcggcaggtgcttggagc 338 Query: 403 atataggacattg 415 ||||||||||||| Sbjct: 337 atataggacattg 325 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,712 Number of Sequences: 1807 Number of extensions: 29712 Number of successful extensions: 546 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)